| New model in OGS2.0 | DPOGS207134 |
|---|---|
| Genomic Position | scaffold1:+ 3327121-3329458 |
| See gene structure | |
| CDS Length | 750 |
| Paired RNAseq reads | 791 |
| Single RNAseq reads | 3055 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA013096 (2e-66) |
| Best Drosophila hit | SF2 (6e-62) |
| Best Human hit | serine/arginine-rich splicing factor 1 isoform 1 (1e-49) |
| Best NR hit (blastp) | PREDICTED: similar to SF2 CG6987-PA [Apis mellifera] (4e-89) |
| Best NR hit (blastx) | alternative splicing factor ASF/SF2, putative [Ixodes scapularis] (3e-68) |
| GeneOntology terms | GO:0005681 spliceosomal complex GO:0000398 nuclear mRNA splicing, via spliceosome GO:0003729 mRNA binding GO:0006376 mRNA splice site selection GO:0005515 protein binding GO:0005634 nucleus GO:0003676 nucleic acid binding GO:0000166 nucleotide binding GO:0071011 precatalytic spliceosome GO:0071013 catalytic step 2 spliceosome |
| InterPro families | IPR000504 RNA recognition motif domain IPR012677 Nucleotide-binding, alpha-beta plait |
| Orthology group | MCL14895 |
Nucleotide sequence:
ATGTCCGGAGGTAGCGGCGGTAGCAGGAATGAATGTAGAATATACGTTGGTAATCTGCCT
CCTGATATTAGGACAAAGGACATCCAAGACCTTTTTTACAAATTTGGTAAAGTCACGTTC
GTTGATTTGAAGAACAGAAAAGGACCACCGTTTGCATTCGTCGAATTTGAAGATCCTCGT
GATGCAGATGATGCAGTTCGAGCCCGCGATGGCTATGACTACGATGGATATAGGCTACGT
GTAGAGTTCCCTCGTGGAGGCGGCGGTGGTGCGCGCGGAGGACGCTCGCAGCCTGATCGC
TTTGGGCCGCGTCCAGCAGCACGAGGCCCGCCCGCACGTCGCTCCGAGTATAGAGTGCTC
GTCACAGGACTGCCGCCATCGGGCTCCTGGCAGGATCTGAAGGACCATATGCGCGAAGCG
GGAGACGTGTGCTTCGCGGACACTTTCAAGGATGGCACTGGTGTGGTGGAATTCCTACGA
CACGAGGACATGAAGTACGCCGTCAAGAAGCTGGACGACTCGCGCTTTAGAAGCCACGAG
GGAGAGGTGTCTTACATCCGGGTTAAGGAAGACTATGGCAGCGGCGGCGGCGGCGGGCTC
AGGGACAGATCTCCTGAGTATCAGGCCGGGTCACCTTCGTACACCCGTCGGGGCTCCCCA
TCATACTCTCCGGTGCGTCGCTCGTACTCGCGCTCACGTTCCCGCTCTCGTTCCCGCTCG
CCTGTAACCACCCGCCCACGAAACTACTGA
Protein sequence:
MSGGSGGSRNECRIYVGNLPPDIRTKDIQDLFYKFGKVTFVDLKNRKGPPFAFVEFEDPR
DADDAVRARDGYDYDGYRLRVEFPRGGGGGARGGRSQPDRFGPRPAARGPPARRSEYRVL
VTGLPPSGSWQDLKDHMREAGDVCFADTFKDGTGVVEFLRHEDMKYAVKKLDDSRFRSHE
GEVSYIRVKEDYGSGGGGGLRDRSPEYQAGSPSYTRRGSPSYSPVRRSYSRSRSRSRSRS
PVTTRPRNY