New model in OGS2.0 | DPOGS205993  |
---|---|
Genomic Position | scaffold407:+ 80657-88842 |
See gene structure | |
CDS Length | 576 |
Paired RNAseq reads   | 576 |
Single RNAseq reads   | 1762 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA009419 (2e-88) |
Best Drosophila hit   | CG5941 (3e-72) |
Best Human hit | malignant T cell-amplified sequence 1 isoform 2 (3e-62) |
Best NR hit (blastp)   | mct-1 protein [Aedes aegypti] (7e-89) |
Best NR hit (blastx)   | mct-1 protein [Aedes aegypti] (9e-87) |
GeneOntology terms   | GO:0003723 RNA binding |
InterPro families    | IPR002478 Pseudouridine synthase/archaeosine transglycosylase IPR015947 Pseudouridine synthase/archaeosine transglycosylase-like IPR016437 Translation-associated RNA-binding, predicted IPR004521 Uncharacterised conserved domain CHP00451 |
Orthology group | MCL12958 |
Nucleotide sequence:
ATGGCAAGTGTGCTATGGATTACCTTCTGGAATGATCGATTTGATGAAAAGGAAAGCATT
TCAGGCGTTCAGCAGCTGAAGTCCTCGGTACAGAAGGGCATCAGATCCCGTCTGTTGGAA
CTGTACCCACATCTGGAGAACCACATTGACCAAGTACTACCCAAGAAGGATACATTTAGG
ATTGTCAAATGTCATGACCACATCGAGATCATGGTGAACAGTGCCGGGGAATTGCTGTTC
TTCAGACACAGAGAAGGTCCTTGGATGCCAACCTTGAGGCTGCTACATAAATATCCATTC
TTCTTACCAATGCAGCAAGTCGACAAAGGTGCTATAAGATTCGTTCTTAGCGGTGCTAAT
ATAATGTGCCCCGGACTGACTTCACCTGGAGCACGTATGTCGAGTGTAGTGAAAGGCAGT
GTTGTAGCTGTTATGGCCGAGGGCAAACAGCATGCGTTGGCTGTTGGCATAACTTCACTA
TCAACTGATGATATAGCGAAAGTCAACAAGGGCGTCGGCATAGAGAACTGTCACTATTTG
AATGATGGCTTATGGCAGATGAAACCAGTGAAGTGA
Protein sequence:
MASVLWITFWNDRFDEKESISGVQQLKSSVQKGIRSRLLELYPHLENHIDQVLPKKDTFR
IVKCHDHIEIMVNSAGELLFFRHREGPWMPTLRLLHKYPFFLPMQQVDKGAIRFVLSGAN
IMCPGLTSPGARMSSVVKGSVVAVMAEGKQHALAVGITSLSTDDIAKVNKGVGIENCHYL
NDGLWQMKPVK