| New model in OGS2.0 | DPOGS208542 |
|---|---|
| Genomic Position | scaffold28:- 271739-277716 |
| See gene structure | |
| CDS Length | 2517 |
| Paired RNAseq reads | 773 |
| Single RNAseq reads | 1741 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA005180 (1e-95) |
| Best Drosophila hit | meiotic 9 (0.0) |
| Best Human hit | DNA repair endonuclease XPF (1e-157) |
| Best NR hit (blastp) | GI16132 [Drosophila mojavensis] (0.0) |
| Best NR hit (blastx) | DNA repair endonuclease xp-f / mei-9 / rad1 [Aedes aegypti] (0.0) |
| GeneOntology terms | GO:0016321 female meiosis chromosome segregation GO:0007131 reciprocal meiotic recombination GO:0006289 nucleotide-excision repair GO:0006298 mismatch repair GO:0004520 endodeoxyribonuclease activity GO:0046982 protein heterodimerization activity GO:0006302 double-strand break repair GO:0006310 DNA recombination GO:0005634 nucleus GO:0000712 resolution of meiotic recombination intermediates GO:0005515 protein binding GO:0045132 meiotic chromosome segregation GO:0003677 DNA binding GO:0043234 protein complex |
| InterPro families | IPR011335 Restriction endonuclease, type II-like IPR010994 RuvA domain 2-like IPR020819 DNA repair nuclease, XPF-type/Helicase IPR006166 ERCC4 domain |
| Orthology group | MCL11979 |
Nucleotide sequence:
ATGGCCAAAGGACTAAGTTACAATAGCATTGTTTCCAATTTATTGTGGGTTTATAAGGAT
CCGGGAAATTTAGTATTAATAATAAATAGCAGCGACCATGAAGAAAAATTTTTCAGTGAG
AAATTCAATTTATCAGTTTTACCAAATTTGGGGTCGGAGAGGGAAAAAGCTTATTTAGAG
GGTGGCATATATTTTGTGTCGACAAGAATACTAGTAGTTGATTTATTAAAAAAGCGAGTA
CCGGTAACCCACATAACGGGGATCATTGTGTTGAGGGCTCACACAGTACTGGAGTCATGT
CAAGAGGCTTTCGTTCTCAGGTTATTTAGACAAAATAATAAGACAGGTTTTATAAAAGCA
TTTTCAAACTCACCTATATCATTCACGTTTGGCTATCATCAAGTGGAAAAAGTTATGAGA
GCTGTTTTCGTCAAAGAATTATATTTATGGCCCAGATTCCATGGTTTAGTCATTAAAAGT
CTTAAAAGTAGGCAAGCTGAGGTGGAAGAGATACATGTTTCGTTGACGCCGAATATGTTA
CAAATACAAACGTGTCTTCTAGACATCATGAATTATACAGTGAAACAACTTAAGAGCATT
AACAGAAATCTGGACATGCAAGAAATTACTACAGAAAATTGCATAACCAAAAAGTTCCAT
AAAATATTACAATCCCAACTCGACTGTGTGTGGCATCAGCTCAGCAACAGAACAAAGGAA
TACATACAGGATTTGAAAGTTTTAAGGACTTTGATAGTTAATCTAATCCACGAGGATTCT
GTATCCTTCTATTGGCTGGTCAGTAAGTATCGTACATCAGAGTATGCTCAGGTCAACTCG
GGTTGGATTCTGTTGGACTCGGCTGAAAGGCTGTTCAAGGTAGCAAGATCTAGAGTCTTC
AACGGCAATGAATTTGATCCTGAACACTGTCCTAAATGGAAGTGCTTGAGTGATTTATTA
AAAGTTGAAATACCAGAGGAAGTGAAAAAGAAGAATAACGGGTCGCTTAATAATACCAAA
GTGCTTATACTGTGTGAGAACAATAAGACGTGTTTCCAACTCAACAACGTCTTGACTATG
GGGGCCAATAGGTATCTATTCTATAATGCATTCCGAAGAGACATACAGATTACATCCGTT
TCATCCAAATATAAAAATCTCACAGAAGAATTTCCAACAAAATCTGACAAAGATCGAGTT
AAAGACAATAAAGATGATAGTAATTTGGATGAAGAATTGGATGAAGTCAAATCAAATTAT
ATGTTAACTTTGACACAGGCTATGGAAATGAATAAAAATACAACAGAAGACAGTATGTTT
GAACCCATCTCACAGTTGGCTAACTTAGATCTCACTCAATTGGAAAATGAAAAACCTTTG
ATATGTATACAAACGTTCAAGCAGAATGGAAACCATTTCTCGTTAGAGCAGACGTTAGAG
GCGTTGAGGCCGGAATACATCATACTGTATCAGAGCGACGTGTCGGCCGTGCGACAGATA
GAACTGTATGAATGCAAGAAAAAACCCGAGGAGCCGAAGTCTAAAATCTATTTCCTTATA
CACGACAAAACCGTGGAGGAACAGTCGTATCTGACGTCACTGAGGAGGGAGAAGCAGGCG
TTTGAAATGCTCATTCAAGCTAAGAGTGTGATGGTGGTACCTTCGTATCAGGACGGGAGA
ACTGATGAGTATTTTAATTTAAATGTCGAAGAAAACGAATCGGCCGTAAACACGAGGAAA
GCAGGCGGTCAAGTGTCGTCAGTGGCGCCGCGTGTTATAGTGGACATGCGTGAGTTCCGT
TCCGACCTGCCAGCGCTTCTTCACCGCCGTGGGATCAACATAGATCCCGTCACCATCGCG
ATAGGCGACTATATTCTGACGCCGGATATATGCGTAGAGAGGAAATCAATCTCGGATTTG
ATTGGATCGCTCAACTCCGGTCGTTTGTACACACAATGTACACAGATGTGTCGGAACTAC
TCCAGACCCATACTACTTATTGAGTTTGATCAGAATAAACCGTTCAATTTACAGGGTAAC
TTTGTTGTATCTACGGATATATCGGGTGCTGACATACAGCAAAAATTACAGCTACTTACA
ATACATTTCCCGCGTCTAAAGCTAGTGTGGTCGCCGAGCCCTTATGCTACAGCTGAACTA
TTCTATGAACTCAAAGAAGGTAGGAAGAACCCTAACGTAGACGAAGTTGTAGCGCTCAGT
GGTGAAAACACAGCTGATGATATGAACTACGAGAGATATAATATCGTTGTTCACGATTTC
GTCCAGAAACTCCCAGGAGTCACGTCCAAGAATATATCCAGGATCATGAACAGGGGCATT
TCGTTGGACCATCTAATTACCCTGACACAGGATCAATTACAGGAAATAGTAGAAAATAAG
AACGAAGCTGAAATAATATATTCAGTATTACATGTAAAAGCAAAGCCAGTTGACTCGGAC
AAAACAAAGCCTTTTGGTAAAAGGAAGTTGGGGGGGAAATTTAAAAGCAATAAATGA
Protein sequence:
MAKGLSYNSIVSNLLWVYKDPGNLVLIINSSDHEEKFFSEKFNLSVLPNLGSEREKAYLE
GGIYFVSTRILVVDLLKKRVPVTHITGIIVLRAHTVLESCQEAFVLRLFRQNNKTGFIKA
FSNSPISFTFGYHQVEKVMRAVFVKELYLWPRFHGLVIKSLKSRQAEVEEIHVSLTPNML
QIQTCLLDIMNYTVKQLKSINRNLDMQEITTENCITKKFHKILQSQLDCVWHQLSNRTKE
YIQDLKVLRTLIVNLIHEDSVSFYWLVSKYRTSEYAQVNSGWILLDSAERLFKVARSRVF
NGNEFDPEHCPKWKCLSDLLKVEIPEEVKKKNNGSLNNTKVLILCENNKTCFQLNNVLTM
GANRYLFYNAFRRDIQITSVSSKYKNLTEEFPTKSDKDRVKDNKDDSNLDEELDEVKSNY
MLTLTQAMEMNKNTTEDSMFEPISQLANLDLTQLENEKPLICIQTFKQNGNHFSLEQTLE
ALRPEYIILYQSDVSAVRQIELYECKKKPEEPKSKIYFLIHDKTVEEQSYLTSLRREKQA
FEMLIQAKSVMVVPSYQDGRTDEYFNLNVEENESAVNTRKAGGQVSSVAPRVIVDMREFR
SDLPALLHRRGINIDPVTIAIGDYILTPDICVERKSISDLIGSLNSGRLYTQCTQMCRNY
SRPILLIEFDQNKPFNLQGNFVVSTDISGADIQQKLQLLTIHFPRLKLVWSPSPYATAEL
FYELKEGRKNPNVDEVVALSGENTADDMNYERYNIVVHDFVQKLPGVTSKNISRIMNRGI
SLDHLITLTQDQLQEIVENKNEAEIIYSVLHVKAKPVDSDKTKPFGKRKLGGKFKSNK