| New model in OGS2.0 | DPOGS208546 |
|---|---|
| Genomic Position | scaffold28:- 206898-208760 |
| See gene structure | |
| CDS Length | 684 |
| Paired RNAseq reads | 528 |
| Single RNAseq reads | 2006 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA010333 (1e-105) |
| Best Drosophila hit | U2 small nuclear riboprotein auxiliary factor 38 (8e-102) |
| Best Human hit | splicing factor U2AF 35 kDa subunit isoform b (1e-89) |
| Best NR hit (blastp) | PREDICTED: similar to U2 snrnp auxiliary factor, small subunit [Nasonia vitripennis] (4e-112) |
| Best NR hit (blastx) | Splicing factor U2Af 38 kDa subunit, putative [Pediculus humanus corporis] (1e-107) |
| GeneOntology terms | GO:0000398 nuclear mRNA splicing, via spliceosome GO:0005686 U2 snRNP GO:0008187 poly-pyrimidine tract binding GO:0005681 spliceosomal complex GO:0005634 nucleus GO:0003729 mRNA binding GO:0000166 nucleotide binding GO:0008270 zinc ion binding GO:0000381 regulation of alternative nuclear mRNA splicing, via spliceosome GO:0007052 mitotic spindle organization GO:0071011 precatalytic spliceosome |
| InterPro families | IPR000504 RNA recognition motif domain IPR000571 Zinc finger, CCCH-type IPR009145 U2 auxiliary factor small subunit IPR012677 Nucleotide-binding, alpha-beta plait IPR003954 RNA recognition motif domain, eukaryote |
| Orthology group | MCL15269 |
Nucleotide sequence:
ATGGCCGAATATTTAGCGGCTATATTTGGTACTGAAAAGGATAAGGTAAATTGCTCATTC
TATTTTAAAATAGGAGCTTGTCGACATGGTGATCGATGTTCGAGAATTCATAACAAACCA
ACTTTTTCGCAAACTGTGTTGCTACAAAATTTATATGTAAATCCACAAAACTCAGCCAAG
TCTGCTGATGGCAGTCATTTGGTTGTGGCAAATGTATCGGACGAGGAGATGCAAGAGCAC
TATGATAACTTTTTTGAAGATGTTTTTGTTGAATGTGAAGATAAATATGGTGAAATTGAG
GAAATGAATGTATGTGACAACCTCGGAGATCACTTAGTAGGCAATGTTTATATTAAGTTT
CGCCGAGAGGAAGATGCCGAGAAGGCTGTAAATGACCTCAATAACCGCTGGTTTGGAGGC
CGGCCTGTTTATGCTGAGTTGTCTCCTGTAACTGACTTCCGTGAAGCTTGCTGTCGTCAG
TATGAAATGGGGGAATGTACCAGGAGTGGCTTTTGTAATTTCATGCACTTGAAACCAATT
TCAAGAGAACTGAGGAGATACCTGTACGCTCGTCGTAAGGGCGGCCGCCGGTCCAGGTCC
AGGTCTCGTGAGCGTCGCCGGCGATCGAGATCGCGCGACCGTCGCCGCGAGCCGCCTCGC
AACTCGCGCTCTGGACGGTACTGA
Protein sequence:
MAEYLAAIFGTEKDKVNCSFYFKIGACRHGDRCSRIHNKPTFSQTVLLQNLYVNPQNSAK
SADGSHLVVANVSDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKF
RREEDAEKAVNDLNNRWFGGRPVYAELSPVTDFREACCRQYEMGECTRSGFCNFMHLKPI
SRELRRYLYARRKGGRRSRSRSRERRRRSRSRDRRREPPRNSRSGRY