New model in OGS2.0 | DPOGS208549  |
---|---|
Genomic Position | scaffold28:- 115352-121034 |
See gene structure | |
CDS Length | 1806 |
Paired RNAseq reads   | 602 |
Single RNAseq reads   | 1443 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA010322 (0.0) |
Best Drosophila hit   | flyers-cup, isoform B (9e-104) |
Best Human hit | leucine-rich repeat-containing protein 40 (2e-68) |
Best NR hit (blastp)   | PREDICTED: similar to mitotic protein phosphatase 1 regulator, putative [Tribolium castaneum] (2e-172) |
Best NR hit (blastx)   | PREDICTED: similar to mitotic protein phosphatase 1 regulator, putative [Tribolium castaneum] (6e-150) |
GeneOntology terms    | GO:0007265 Ras protein signal transduction GO:0005515 protein binding |
InterPro families    | IPR001611 Leucine-rich repeat IPR003591 Leucine-rich repeat, typical subtype |
Orthology group | MCL14573 |
Nucleotide sequence:
ATGTCACGTCGTACACCTACAAAATCACGAGTAAAAATTTGTAACAAATCTGTATTTCAT
CTCCAAGATAAAAAAGCAGACGAAAATGAACTATCTATTGGTTTAATAAAATCTGCGAAG
CGTACAGGACAACTCAGTTTATGTAATAGAGGCCTGGGTACAGTTCCTGAAAATGTTTGG
AAAGTTAATGATTTGGTTATGGATGATACAAAAGATGTGGATTTTTCAAGATCTCCTCGA
GATAACTGGTGGAATGCAGAGCCATTAAAAATGCTTGATCTTAGTTCTAATGTTATTAAG
ATCATCTCACCCAATATAAAGTTACTATCAGAACTTATAACATTAAAGCTTCATGATAAT
GCCATTGAGAGTATTCCTCCTGAAATTGGTGAATTAAACAATTTATCCAATTTAAGTTTA
GACCATAACAGATTGGAATGTTTGCCAAAGGAGTTTTATAAACTGACTGAAATGAGATGG
CTGAGTATTTCTTATAATTCAATAAAAAATATTGAACCAGATTTCGGGGACCTTGTAATG
TTGACTTTCCTGGATTTATCTCATAATAAACTGACTTCTCTGCCGCCCGGAATGGGTTAT
TTAGTACGCTTGGTGGATTTAAACCTGTCTTATAATGAGCTTACCGAACTTCCGCCGGAT
ATTGTTAATCTTAGAGATTTGAAGAAATTTAATGTGAGCAATAATGATTTGAAGAAGCTA
CCAGCGCTCGGAGAACTTAGAAAGATGGAAACCTTAGATGCTAACCATAATGCAATTGAA
GAATTGCCTGATTTCTATGGCTGTGTGGCCTTGAAGGAAATCTACATCGCTAATAATTTC
ATAAAGGAAATCACAGAGGAGTTTTGTGATCAGATGCAGCATTTAAATGTGTTGAATATC
AGGGACAATAAACTAGAAGTGCTTCCAGAGAACATATCACTGCTTCAGAATCTTAAGAGA
TTTGATTTATCTAACAACAATTTAAACAAATTGCCGAAAAATTTGGGTCTCCTATCACAA
TTGCAGAGCATCAGTATGGAAGGTAACAAGCTGTCGTTTGTACGGCAGGATGTTATCCGA
GGGGGCACGGACAGGATGATGAAGTATCTGAGAGATCGGATGGCTGAGGAAGTGGTGGGG
GAGGCGAGGCTCAATGAGAACAACTGGCCAGATAAATACACATTGAAGAAAAGTCAAGCT
TTGATTGTACCAGCAAAGGAATTGGCTTCCGTGCCTGAAGATGTGTTCGTAGCCGCGGCG
CAGGCGGAAGTACATGTCATTGATCTATCGAGAAACAAGTTAACAGGGCTGCCAGCGGGG
TTCCACCTGGTCCGGGATACGTTGACACAGTTGTTGCTATCATCTAACAGCATAGAGGTG
GTACCTCCAGAGATCAGTGCTTGTAAACACTTGCAATACATCGACCTCGGGAAGAACTGT
CTCACAGATCTTCCCATGGAGATGAGCGATTTGAAGAATTTGAGGGAACTGGTGATATCT
AATAACAGGTTTACTAAGATTCCTCGCTGTGTTTACGATTTGGAAAATTTAGAGATTTTA
TTGGCTGCCGAGAACCAAATAACAGAGATCAATGTATCTTCGGACGCTTTGGCCAAGTTG
AAGAAACTGGCGGTATTGGATCTCACTAACAACAGTATTATTACCGTGCCGCCTGAACTA
GGGAACTTTACGCATTTACGGTCTTTGGAACTCATGGGTAATTGCTTCCGTCAACCGCGG
CACGCCGTCCTTACTAAGGGCACGGCTTCCATATTGTCATATCTTAGAGATAGAATACCT
ACGTAA
Protein sequence:
MSRRTPTKSRVKICNKSVFHLQDKKADENELSIGLIKSAKRTGQLSLCNRGLGTVPENVW
KVNDLVMDDTKDVDFSRSPRDNWWNAEPLKMLDLSSNVIKIISPNIKLLSELITLKLHDN
AIESIPPEIGELNNLSNLSLDHNRLECLPKEFYKLTEMRWLSISYNSIKNIEPDFGDLVM
LTFLDLSHNKLTSLPPGMGYLVRLVDLNLSYNELTELPPDIVNLRDLKKFNVSNNDLKKL
PALGELRKMETLDANHNAIEELPDFYGCVALKEIYIANNFIKEITEEFCDQMQHLNVLNI
RDNKLEVLPENISLLQNLKRFDLSNNNLNKLPKNLGLLSQLQSISMEGNKLSFVRQDVIR
GGTDRMMKYLRDRMAEEVVGEARLNENNWPDKYTLKKSQALIVPAKELASVPEDVFVAAA
QAEVHVIDLSRNKLTGLPAGFHLVRDTLTQLLLSSNSIEVVPPEISACKHLQYIDLGKNC
LTDLPMEMSDLKNLRELVISNNRFTKIPRCVYDLENLEILLAAENQITEINVSSDALAKL
KKLAVLDLTNNSIITVPPELGNFTHLRSLELMGNCFRQPRHAVLTKGTASILSYLRDRIP
T