New model in OGS2.0 | DPOGS208482  |
---|---|
Genomic Position | scaffold28:+ 4453-7232 |
See gene structure | |
CDS Length | 2652 |
Paired RNAseq reads   | 645 |
Single RNAseq reads   | 1714 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA010625 (7e-48) |
Best Drosophila hit   | scattered (5e-169) |
Best Human hit | vacuolar protein sorting-associated protein 54 isoform 2 (6e-63) |
Best NR hit (blastp)   | vacuolar protein sorting [Culex quinquefasciatus] (0.0) |
Best NR hit (blastx)   | vacuolar protein sorting [Culex quinquefasciatus] (0.0) |
GeneOntology terms    | GO:0007286 spermatid development GO:0007291 sperm individualization GO:0008270 zinc ion binding GO:0005515 protein binding GO:0006896 Golgi to vacuole transport GO:0005794 Golgi apparatus GO:0005739 mitochondrion GO:0042147 retrograde transport, endosome to Golgi |
InterPro families    | IPR012501 Vps54-like IPR019515 Vacuolar protein sorting-associated protein 54 |
Orthology group | MCL14749 |
Nucleotide sequence:
ATGGAGGACAAGAATACCACAAATAAGACGCCAGCATGGCAAAACTGTGTTCATTGCCCA
AACCTTCTGTTCAACTCTGCCACGGAATTCGAAAGGCACATACACGAAAAACACAGTATT
AAAGAGGGCTCCATCGTACTATGCCAATATGGGCAGAATGGCATTTGTTCAGCATTGCAA
TTTGGTGATTTACGAAAAGCAGGATTTAAGTACCACATTAGACAACACCACCTTTATAAA
AATTGTATAAATGATGACTGGACATTCTATTCCTCATCACAAAACTTGCCTGCAGTATTG
AATGATCCAAACAGAGGCAAGCAGAACAATTTTTTTACTAAAACATGGGGTGACAGCTTT
ACTGATAAGGTAGATATATATCCTAGTCCATATTTGCCAGTTATAACTCTGGCTCACTTT
GAATCATACTGTAAAAAAATATCAAAAAGATTTAAAAGGCACCGACAACTTAAAGAGACT
CTACCAGCTAAAAGTAAAACACCAGTAGTGGAAACAGTTTGTGAGATTCCTAGCATCTTT
TATGAGCAATCTTTAGCTCTTAATGACCCTCAAAACTTCAGTAAAGTTTTTCCTGGGTTA
TCAAACACACAGGACATAAATAGCACCATAAGGTCACTCCAAGAAACTTTGAGTACATAC
CTTGATATAATTGAAATGAAGATATCAAAACAGGTAGCGCAGAAATCTGATGCCTTTTTC
CATGCTATGCTTTCTCATGACACTATCATGGAACAGATGGCGAGAGCCGTTAGAACAGTT
CAAAATACAAGGAGGGATATAAAAGATGTTAAAGAGAATTTAACTGATAGTCCTTTAAAA
TTAATAAGCCTCACTAGAATCAACAAAAACCTTAACAATGTTCATGAACTCTTGAAGTTA
ATGGGAACAGTGCAGCAAACCCAACCTATGATTCAACTTCTTTTAAGTACTTCAGACTAT
GTTGCTGCTCTTGACTTAATAAGCTCTACACAAAGAGTTCTATCGACAAGATTATCGGGT
ATACAAGCCTTCAGACATTTATCACCACAGCTGACAGAGATGAAAAGGTTGATACACAAG
ATGTTAAGCAATGAATTTCTAAGATTTATTATTGCTGACATAAACAGACCTCTAAAAGAT
ACTGCTGATTTACCAGAAAGAGATAAAATTGTCTCCATTGTATCAGGTATACTCCGTTTG
AAAGAATTTGATTTTCTAGACATATTCAAAACAGAAGCAATGACTTCAATTCAAACGACT
ATAAAACAATGTGTCATAGAAATAATATCAGATAGAGATGGTAGTACAGAAATAGTATTA
AGGGGATCTAATACAGACACATGGTTGCTTTGTAATGAAGGTATCATCTTTCTTCAGAAA
GTCACTCCCAATATAGTTAATTTATTTAGAAGAATTTTATCTTTGTGTAATTTAATATTG
GATGTCAGTCAAATGAGTGACATCACAGGAAATGATAGTGAAGATATATGGACACAGGAT
GAGCTTTTATTAATTGAGGATAAAATTAAAAAACTTATTATCTCACTGTCTGACTACAGC
AACGAAAAATGTGCCAATCTCATTGTAACTAAGACGGATAGAGACTACGTTTTCACAGAT
TTAACACAACTATCAAAATTATCAAAGCTAATAGAAGACTTTTCAAAGGAGTGCGAAAAT
ATAACAGGACACTACAGTAATTCAATGAAATTGGCGTTAAGAAGTTTTGCTATGAAATAT
ATTCAAAATTTGCATTCTGATAGACGGGTACAACTGACCACAGCTCTTAACAGTGAGAGA
TGGAAAATTGCTGATGTACCATATGAGTTACAGAGTGTAATAAACAAAATATGTGAAATT
GGGGAAATACCTTCAACACTTAATTACGAAAGTGGCAAGGCTGATGGTAAATATTTAATT
ATAGATAAGGAGAGCTATGCTGTCGTTGCGACAGTGCAACTTTTGATAAAAATTCTACTT
GAGTACTGTGACGCAATAAAACAGTCTCCAGATATTGTTCAATATTTAGTTCATTGTATG
TTAGAATTGATGAGATTGTTTAATTCTCGATGTTGCCAGTTGGTTTTGGGTGCTGGAGCT
ATACAGAGTGCTGGATTAAAAACAATTTCTACATCAAATTTAGCTTTAGTGTCTAGATCA
CTTCAAGTAATACTTTGGCTTTTACCATTAATAAAAAAATTATTAGAAGAAAATAGCTCC
AAAGATTTGTCCCTCGGTGGATTTAACAGCATTGAGAGTGACATAATTGGTCATAAGAAG
GAAATTGAGAGCAAAATCTGTTTCATAGTGAGCAACATGTTGAGTTCTCAGTTAGTTGGC
TGGGAAGCTAAGCCTCCAGTACCTTCGCAGACATTCCGTAACATTTCTAAACACTTGGTC
AAACTGCATGAAGCTCTCATAGATATTTTACCTTTAGAACAAATCCGAAATATTTACATG
AAAGTACACGACAATTTTAAAGACAAATTACGAGAACAATTAAGCAAAATGAACATAGTT
GCGAACGGTAGCCCCCAGCACGGTGTTGTGACTTCTGAATTAACTTTTTATTTACAAACC
CTCAAAACATTAAGAGTGATCAATGAAAACGATCCTGAGGATAATATTTTATATGATATT
TGGTTACATTAA
Protein sequence:
MEDKNTTNKTPAWQNCVHCPNLLFNSATEFERHIHEKHSIKEGSIVLCQYGQNGICSALQ
FGDLRKAGFKYHIRQHHLYKNCINDDWTFYSSSQNLPAVLNDPNRGKQNNFFTKTWGDSF
TDKVDIYPSPYLPVITLAHFESYCKKISKRFKRHRQLKETLPAKSKTPVVETVCEIPSIF
YEQSLALNDPQNFSKVFPGLSNTQDINSTIRSLQETLSTYLDIIEMKISKQVAQKSDAFF
HAMLSHDTIMEQMARAVRTVQNTRRDIKDVKENLTDSPLKLISLTRINKNLNNVHELLKL
MGTVQQTQPMIQLLLSTSDYVAALDLISSTQRVLSTRLSGIQAFRHLSPQLTEMKRLIHK
MLSNEFLRFIIADINRPLKDTADLPERDKIVSIVSGILRLKEFDFLDIFKTEAMTSIQTT
IKQCVIEIISDRDGSTEIVLRGSNTDTWLLCNEGIIFLQKVTPNIVNLFRRILSLCNLIL
DVSQMSDITGNDSEDIWTQDELLLIEDKIKKLIISLSDYSNEKCANLIVTKTDRDYVFTD
LTQLSKLSKLIEDFSKECENITGHYSNSMKLALRSFAMKYIQNLHSDRRVQLTTALNSER
WKIADVPYELQSVINKICEIGEIPSTLNYESGKADGKYLIIDKESYAVVATVQLLIKILL
EYCDAIKQSPDIVQYLVHCMLELMRLFNSRCCQLVLGAGAIQSAGLKTISTSNLALVSRS
LQVILWLLPLIKKLLEENSSKDLSLGGFNSIESDIIGHKKEIESKICFIVSNMLSSQLVG
WEAKPPVPSQTFRNISKHLVKLHEALIDILPLEQIRNIYMKVHDNFKDKLREQLSKMNIV
ANGSPQHGVVTSELTFYLQTLKTLRVINENDPEDNILYDIWLH