| New model in OGS2.0 | DPOGS208500 |
|---|---|
| Genomic Position | scaffold28:+ 278830-286439 |
| See gene structure | |
| CDS Length | 1884 |
| Paired RNAseq reads | 7582 |
| Single RNAseq reads | 23339 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA005177 (3e-155) |
| Best Drosophila hit | no on or off transient A, isoform A (1e-85) |
| Best Human hit | splicing factor, proline- and glutamine-rich (5e-57) |
| Best NR hit (blastp) | splicing factor proline- and glutamine-rich [Bombyx mori] (0.0) |
| Best NR hit (blastx) | PTB-associated splicing factor [Bombyx mori] (1e-158) |
| GeneOntology terms | GO:0003723 RNA binding GO:0005634 nucleus GO:0005737 cytoplasm GO:0006406 mRNA export from nucleus |
| InterPro families | IPR000504 RNA recognition motif domain IPR012677 Nucleotide-binding, alpha-beta plait IPR012975 NOPS |
| Orthology group | MCL11525 |
Nucleotide sequence:
ATGCAAATGCACGCCATGAACCAATATCGAGGATTTGGAGGCCCACCTCAGCCCCAAAGA
CAAGGCGGTCGTCGGGGCAATAATCGAGGCGGATTCCGCAATTCCCGCTTTGAGCATAAT
CAGAATCAGCGAGGGCATAACTTCCATGGGGGTCAACGTCCCCATATTGAGCCTGTAAAA
CAAGGTCCCCAAAATGAACCGCCACCACCGCAACCACAGCCTCAACCGCAGGCTCAGCAG
GAGAAGAAAGAATCCTCTCCTCAACAGACTCCACAGACTCCACAACAGCCACCTCCAAAG
CCTCAACCACCTCAACAAAAGCCATTGCAACAGCAACCAGCTCAAAAACCACCTCAAAAT
CCAACCCAACCTCAACAGACACCATCTCAACCACCGGTTAAACCGGAATCCCAAGACCAT
GTTGATAAAGCTGCACCTGAACAGAGACCTCAAAACCAAAATCAAAACCAGGGTGCTTAT
CAAAAGAATGTCAATGGTGGCAACTTTGGTGCTAACAAACAGGGTGGTTGGAGTCAGGGG
GGGCCGGGTAATAAGCCAGGTGGCAATTTTGGTCCAAAAGGTTTTGGTCCAAAACAACAA
CAAGGACAGGGTCCAGCTCGTAACCAACAGAGGAATAACATGGGGCGTGGACCTCAAGAT
GGCGGGAAGCCACAACAAAGAGAAGAACAAATGCTTGCTAATAAATTGAAAGATCTCATG
GGCCCATTGAATGACATACCTCCAATTGAACAACCGGAGGTCAAATTTAATGGCAGAAGT
CGTTTATACATTGGAAATCTTACAAATGATGTTACCGACGAGGAAATACTAACCATGTTT
GGACAGTTTGGTGAAACTGCGGAACTGTTTCTGAACAAAGAGAAGAACTTTGGATTTATA
AAAATGGACTATAGAGTGAATGCAGAAAAAGCTAAACGTGAAATTGATGGCAGAATGAGA
AATGGCAGAAACATCAGAGTAAGATTTGCTCCACATAACAGTGCGGTGCGCGTTAAGAAC
CTGCCACCGTTTGTGTCAAATGAGTTACTGTACAAGGCATTTGAAATATTTGGCAAGATT
GAGAGGGCCTATGTCAAAGTTGATGACAGAGGAAAAACTCTCGGTGAGGGCATTGTTGAG
TTTGCCAGAAAGCCCAGTGCATTAGGTGCCATCCGTAACTGCACTGAAAGATGCTTCTTC
TTAACTTCATCTTTGCGTCCTGTCATTGTGGAGAGTTTGGAGGAACCTGACGAATTTGAT
GGTTATCCTGAGAAGAATTTACCAAAGAAACATCCAGAATTCTTACGTGCCAGAGAAATG
GGCCCACGTTTCTCCGAGCCAGGCAGTTTCGAGCACGAGTACGGTACCAGGTGGAAGCAA
CTCCATGAACTGCACAGACAGAAGGAGGAGGCTCTGAAGAAGGAACTGGCTGCCGAGGAG
GAGAAACTTGAAGCACAGATGGAGTATGCTAAATACGAACATGAAACGGAGCTGCTCCGA
GAACAGCTGCGGCAGAGGGAACAGGACCGAGAGAGACAGAAGAGAAGCTGGGAGATGGCG
GAGAGGGCGGCGGACGAGAGGAGGGAGGCGGAGCGCGCGCAGCTGCTGCGGCAGGAGGAG
GAGCTCAGCAACCGGATGCGGCTGCAGGACGACGAGCTGCGGCGGCGGCAGCAGGAGAAC
ACGCTGTTCGTACAGGCTCAGAGGTTGAACTCGATGTTGGATCGTCAAGAGCAAGGCATG
TTCGACCACCAGCAGCCTATGGATGGAGGCTTCAGAGAGCAGTTCGACATGCCACGTGGA
GGTTATGACGAGATGGCACAGAATCGCGGTTGGGACGGACCGCGCCAAATGGATGATTTT
CCTAATAAAAGACGTCGATTTTAA
Protein sequence:
MQMHAMNQYRGFGGPPQPQRQGGRRGNNRGGFRNSRFEHNQNQRGHNFHGGQRPHIEPVK
QGPQNEPPPPQPQPQPQAQQEKKESSPQQTPQTPQQPPPKPQPPQQKPLQQQPAQKPPQN
PTQPQQTPSQPPVKPESQDHVDKAAPEQRPQNQNQNQGAYQKNVNGGNFGANKQGGWSQG
GPGNKPGGNFGPKGFGPKQQQGQGPARNQQRNNMGRGPQDGGKPQQREEQMLANKLKDLM
GPLNDIPPIEQPEVKFNGRSRLYIGNLTNDVTDEEILTMFGQFGETAELFLNKEKNFGFI
KMDYRVNAEKAKREIDGRMRNGRNIRVRFAPHNSAVRVKNLPPFVSNELLYKAFEIFGKI
ERAYVKVDDRGKTLGEGIVEFARKPSALGAIRNCTERCFFLTSSLRPVIVESLEEPDEFD
GYPEKNLPKKHPEFLRAREMGPRFSEPGSFEHEYGTRWKQLHELHRQKEEALKKELAAEE
EKLEAQMEYAKYEHETELLREQLRQREQDRERQKRSWEMAERAADERREAERAQLLRQEE
ELSNRMRLQDDELRRRQQENTLFVQAQRLNSMLDRQEQGMFDHQQPMDGGFREQFDMPRG
GYDEMAQNRGWDGPRQMDDFPNKRRRF