| New model in OGS2.0 | DPOGS208502 |
|---|---|
| Genomic Position | scaffold28:+ 363785-364279 |
| See gene structure | |
| CDS Length | 390 |
| Paired RNAseq reads | 2601 |
| Single RNAseq reads | 13964 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA010604 (5e-68) |
| Best Drosophila hit | ribosomal protein L40 (5e-65) |
| Best Human hit | ubiquitin-60S ribosomal protein L40 precursor (3e-63) |
| Best NR hit (blastp) | ribosomal protein L40 [Spodoptera frugiperda] (6e-70) |
| Best NR hit (blastx) | ribosomal protein L40 [Spodoptera frugiperda] (3e-69) |
| GeneOntology terms | GO:0006412 translation GO:0006511 ubiquitin-dependent protein catabolic process GO:0003735 structural constituent of ribosome GO:0006464 protein modification process GO:0005515 protein binding GO:0022625 cytosolic large ribosomal subunit GO:0005840 ribosome GO:0042254 ribosome biogenesis GO:0005737 cytoplasm GO:0006355 regulation of transcription, DNA-dependent GO:0005634 nucleus GO:0006950 response to stress GO:0006325 chromatin organization GO:0005811 lipid particle GO:0005875 microtubule associated complex |
| InterPro families | IPR019955 Ubiquitin supergroup IPR019956 Ubiquitin subgroup IPR019954 Ubiquitin conserved site IPR000626 Ubiquitin IPR001975 Ribosomal protein L40e |
| Orthology group | MCL11746 |
Nucleotide sequence:
ATGCAGATTTTCGTTAAGACCCTAACGGGTAAAACCATTACCCTAGAGGTTGAGGCCTCT
GACACCATCGAGAATGTAAAGGCCAAGATCCAAGACAAGGAAGGTATTCCACCAGATCAG
CAGCGATTGATATTCGCTGGAAAACAATTGGAAGATGGTCGTACCTTATCCGACTACAAT
ATTCAAAAGGAATCTACCTTGCATCTTGTGTTGAGACTTAGAGGAGGTACCATTGAGCCT
TCCCTTCGTATCTTGGCAATGAAATACAATTGCGACAAAATGATTTGCCGTAAATGCTAC
GCTCGTCTTCACCCGCGTGCTACCAACTGCCGCAAGACTAAGTGTGGACACACAAACAAC
CTCCGCCCCAAGAAGAAGCTTAAGGATTAA
Protein sequence:
MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
IQKESTLHLVLRLRGGTIEPSLRILAMKYNCDKMICRKCYARLHPRATNCRKTKCGHTNN
LRPKKKLKD