New model in OGS2.0 | DPOGS212927  |
---|---|
Genomic Position | scaffold235:+ 27451-44191 |
See gene structure | |
CDS Length | 1983 |
Paired RNAseq reads   | 25616 |
Single RNAseq reads   | 74855 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA011619 (1e-58) |
Best Drosophila hit   | ribosomal protein L18 (2e-53) |
Best Human hit | 60S ribosomal protein L18 (3e-48) |
Best NR hit (blastp)   | PREDICTED: similar to rap55 [Tribolium castaneum] (8e-98) |
Best NR hit (blastx)   | ribosomal protein L18 [Heliconius melpomene] (1e-83) |
GeneOntology terms    | GO:0003735 structural constituent of ribosome GO:0022625 cytosolic large ribosomal subunit GO:0006412 translation GO:0000022 mitotic spindle elongation GO:0007052 mitotic spindle organization |
InterPro families    | IPR021131 Ribosomal protein L18e/L15 IPR010920 Like-Sm ribonucleoprotein (LSM)-related domain IPR021132 Ribosomal protein L18e, conserved site IPR019053 FFD/TFG box motif IPR000039 Ribosomal protein L18e |
Orthology group | MCL13658 |
Nucleotide sequence:
ATGAGTTCGGGAATGCCTGAACTGGGCTCTAAGATAAGCCTAATATCGAAAGCTGATATT
CGTTATGAAGGCCGACTCTTCACCGTCGATCCTCAAGAATGTACCATCGCCCTGGCTAGC
GTACGGTCTTTCGGCACGGAGGATCGAGAGACTCAGTATCCTGTAGCACCTCAGAACCAA
GTGTATGATTACATTTTGTTCCGAGGATCTGACATCAAGGATATCCGAGTTCTGAACAAT
GTCCCTTCCCTGCCGAACGATCCAGCCATTGTTCAAATGTCCGTACCACCATCGCTCGGT
GGTGGACAAGGTCAAGGGCAGTACTCTGGACAATACAACCATCCTGTGGTCGGGCAAACT
CAATACCCACAATACCATCCCATGGGTGGGTTTCCTGGAAGTGTTCACCCCCAGCTGAAC
AAGACGAGTGAGTTATCTCCACAAACCTCAGTGGATCTGGCCCCACTACAGCCTGTTACT
GCACCAATCGGATCTGGAGTGGTGCATACCAACCAAGTGAAAGACCAAGGTTCAATGCTA
GATCTCATCGGCGGAGGATCCCAGCAGGGTGTTTCTCGTTCAGGGACACCGGCTGTGATC
GGACACAGGAAGAGTCCAACCACTGATCAGGGGACACAGCAGGCCGGTGCATCTGGTCAA
GAGCGTCGTAACAGTAGCGGCAGTAAACAGGCGGGACAGACCCGGCCACGACCCAGTTCC
AGGACACGCCAGCGACAACCCAGCGGCAGCCACAACCCGCCCGCTGAACATATGGACATG
GTTCAAAACAACTACAACCGCGGCGGGACCGCGCCAGCCAGGGCGCCGGGTGGTCGTGGG
TTCGTGCCTCGCAACAAAAACACGCTCAAGTTCGAGAAAGACTACGATTTTGAACAGGCC
AACACTCAGTTCGAGGAACTACGTATACAGCTGGCTAAGACTAAGATAGCCGACGGGGAT
GTTAAAACTGAGGGTGAAGTTGACAAGAAGGATGACTCCGGCAACGAGACCGGCGCGGGG
GAGGCGGAGCTCGAGGAGCATGACGTTATCGCCGGCTACGACAAGAAAAAGAGCTTCTTT
GATAATATTTCATGCGAGGCTGTGGAGAGGTCGAAGGGTCGCAGCCAGAGGACGGATTGG
CGGACGGAGCGCAAGCTGAACTCGGAGACGTTCGGGGTGTCGTCGGCGAGGCGCGGGGCC
TGGAGACCGCGAGCATCCTGGAGGCACGGCCCGCACCCTCCGCACGGACACATGCACCAC
CCTCACCCCCACCCGCACTCTCACCCTCCGGCTCATCCCTGGCGGCCGATGCGAGGCGGT
CGCGGTCGCCCCAACAACAACCCGAACGCTCGCCGCAACACCGCGCCGCCGCCGCAGACG
CAGCCGCAGCCGCAGTCCGCAGCTGACTCTCTTTTTCATCCGGTTGTCAATATGGGTGTC
GACATCAACCATAAACACGACAGGAAAGTCAGGCGTACTGAAGTTAAATCTCAAGATGTA
TACTTGAGGTTGCTTGTAAAGTTATACAGATACTTGGCGAGACGTACAAATGCCAAGTTC
AATCAGATCGTTCTGCGGCGTTTGTTCATGAGCCGTATCAACAGGGCTCCAATTTCCCTG
TCTCGTTTGGCTCGCCACATGAAGAAGCCTACCCGTGAAGGACTTATTGCCGTGGTGGTG
GGTTCAGTAACCAACGACGTGAGGTTGTACAACGTCCCCAAGCTGACTGTTGCCGCTCTT
CACGTCACTGAGAAGGCTCGCGCCCGTATCTTGGCAGCTGGAGGCGAAATCCTAACATTC
GACCAGCTAGCACTCCGTGCGCCCACCGGCCGTAAGACAGTCCTCGTCCAGGGCCGTAGG
AACGCTCGTGAGGCTGTCCGTCACTTCGGCCCGGCCCCAGGCGCTCCTCGCTCTCACACG
AAGCCCTACGTACGTTCCAAGGGACACGAGCGCTCCAGACCTAGCCGTCGCTCTAATGTA
TAA
Protein sequence:
MSSGMPELGSKISLISKADIRYEGRLFTVDPQECTIALASVRSFGTEDRETQYPVAPQNQ
VYDYILFRGSDIKDIRVLNNVPSLPNDPAIVQMSVPPSLGGGQGQGQYSGQYNHPVVGQT
QYPQYHPMGGFPGSVHPQLNKTSELSPQTSVDLAPLQPVTAPIGSGVVHTNQVKDQGSML
DLIGGGSQQGVSRSGTPAVIGHRKSPTTDQGTQQAGASGQERRNSSGSKQAGQTRPRPSS
RTRQRQPSGSHNPPAEHMDMVQNNYNRGGTAPARAPGGRGFVPRNKNTLKFEKDYDFEQA
NTQFEELRIQLAKTKIADGDVKTEGEVDKKDDSGNETGAGEAELEEHDVIAGYDKKKSFF
DNISCEAVERSKGRSQRTDWRTERKLNSETFGVSSARRGAWRPRASWRHGPHPPHGHMHH
PHPHPHSHPPAHPWRPMRGGRGRPNNNPNARRNTAPPPQTQPQPQSAADSLFHPVVNMGV
DINHKHDRKVRRTEVKSQDVYLRLLVKLYRYLARRTNAKFNQIVLRRLFMSRINRAPISL
SRLARHMKKPTREGLIAVVVGSVTNDVRLYNVPKLTVAALHVTEKARARILAAGGEILTF
DQLALRAPTGRKTVLVQGRRNAREAVRHFGPAPGAPRSHTKPYVRSKGHERSRPSRRSNV