New model in OGS2.0 | DPOGS214377  |
---|---|
Genomic Position | scaffold1959:+ 21922-22785 |
See gene structure | |
CDS Length | 864 |
Paired RNAseq reads   | 149 |
Single RNAseq reads   | 601 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA004001 (3e-138) |
Best Drosophila hit   | HMG coenzyme A synthase, isoform E (4e-85) |
Best Human hit | hydroxymethylglutaryl-CoA synthase, cytoplasmic (1e-81) |
Best NR hit (blastp)   | 3-hydroxy-3-methylglutaryl-CoA synthase [Bombyx mori] (2e-142) |
Best NR hit (blastx)   | 3-hydroxy-3-methylglutaryl-CoA synthase [Bombyx mori] (3e-140) |
GeneOntology terms    | GO:0001700 embryonic development via the syncytial blastoderm GO:0004421 hydroxymethylglutaryl-CoA synthase activity GO:0008299 isoprenoid biosynthetic process |
InterPro families    | IPR010122 Hydroxymethylglutaryl-CoA synthase, eukaryotic IPR016039 Thiolase-like IPR013746 Hydroxymethylglutaryl-coenzyme A synthase C-terminal |
Orthology group | MCL11241 |
Nucleotide sequence:
ATGCTCATTGGCCCTGATGCACCATTAGTATTTGATTGTGGTGTACGTGCATCTTATATG
ACTCATGCATATGATTTCTACAAGCCAGATCTTGCATCAGAATTTCCTTATGTGGATGGC
AAGCTATCAATTCAGTGTTATCTTAATGCTTTAGACAAATGTTATAATTTGTTTTGTGAT
AAAATGAAAAAGGTAAACCCGGACTTTAAAGGTCTTTTGAGCCTGGACGGCATGTTATTC
CATTCTCCTTATTGTAAGCTCGTTCAAAAATCACTAGCCAGAGTGTCTTTCAATGATTTC
TTGAATTGTGCTGAAGATGATAGAGAAAAACAATTCCCGGGACTTTCACAGTTCAGCAAA
CACCAAAGATCTGAAACATATTTTGATAGAGATCTTGAAAAGGCATTTATGGCTTACAGC
AAAGATCTGTTTGAAGAAAAAACTAAGCCGTCTCTGTACATTGCAAGAAACGTCGGCAAT
ATGTACACCGCCTCACTGTATGGTGGTTTAGTTTCATATTTAATCAGCAAGTCACCAGAG
CAGTTAATTGGCAAGAAATTTGCCTTGTTCTCTTACGGCTCTGGATTGGCATCGACTATG
TACTCTGTCAATATATGCAATGATATGAGCGCTGGTTCCAAACTAGAAAAGCTCATTAAT
TCTCTTCATAATAATGTAGCTATGTTAGATAAAAGAATTAATGTTGAACCGCAAGCCTTC
TCAGATTCCATGCAAATTAGGACAGAGAATTATCACACGGCACCATACGAGCCATCGGGT
TCCATTGATATACTTTTCCCTGGAACGTACTATCTGGTGAAGATCGATGACCAAAGAAGA
CGGACATATGATAGAAAATTATAA
Protein sequence:
MLIGPDAPLVFDCGVRASYMTHAYDFYKPDLASEFPYVDGKLSIQCYLNALDKCYNLFCD
KMKKVNPDFKGLLSLDGMLFHSPYCKLVQKSLARVSFNDFLNCAEDDREKQFPGLSQFSK
HQRSETYFDRDLEKAFMAYSKDLFEEKTKPSLYIARNVGNMYTASLYGGLVSYLISKSPE
QLIGKKFALFSYGSGLASTMYSVNICNDMSAGSKLEKLINSLHNNVAMLDKRINVEPQAF
SDSMQIRTENYHTAPYEPSGSIDILFPGTYYLVKIDDQRRRTYDRKL