| New model in OGS2.0 | DPOGS209440 |
|---|---|
| Genomic Position | scaffold24:- 186801-194734 |
| See gene structure | |
| CDS Length | 2745 |
| Paired RNAseq reads | 752 |
| Single RNAseq reads | 1921 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA005858 (4e-17) |
| Best Drosophila hit | CG6495 (7e-38) |
| Best Human hit | ND |
| Best NR hit (blastp) | conserved hypothetical protein [Pediculus humanus corporis] (1e-60) |
| Best NR hit (blastx) | conserved hypothetical protein [Pediculus humanus corporis] (6e-52) |
| GeneOntology terms | ND |
| InterPro families | IPR002172 Low-density lipoprotein (LDL) receptor class A repeat IPR013980 Seven cysteines IPR023415 Low-density lipoprotein (LDL) receptor class A, conserved site IPR011106 Seven cysteines, N-terminal |
| Orthology group | MCL16341 |
Nucleotide sequence:
ATGTGTGGTAGCGAGCTAGTGAGGGAGCTCCCACACAACACGACACGAGGACACTGCAGG
GGGAGGAGGGAAGGGGTCAGTACTCACACCACTCCTGAACTTGAAGAACAGCGACATAGG
ACGAGCGGCGAGCTGGTAGGCACTGACGAGGAGCCAGGAGTCTCTGAGTCTCAGAGCAGC
CTCGGAGACGCGCCCGGACACCTCGCACTGACTGCCGCCGCCCGCTCGGTTAATGACACT
ATCCCGGGAAAGCCCGCTTGTTATCACACTGTGAGCGTTCCCTCCGCCCGCGCTGTGTCG
CTGTGTCGCGAGTCAGCCCGCATGCGCGCTATTATCGATCACAGAACATACAAAGCATCA
GAGATAGTGTCAAAAGTATCAAATGTCTGTGTGGATACCAGTGTAGGGGAAGAGACCAGT
TACATGACAGTGATTGTGATGGGTACACGGGCCTGGGTGTGGTGGCTGGTGGTGGGGGCC
GCGTGCTCCCGGGAACTGGACCCCGGCTCGTGCGTCGCGCGTTTCGACGTCCAGCGAGAT
AAGATCATTCGCACGGAGGAGTCCCGGGAGATGGGGGCGAGGTATCTCTCCGAGCTCGAC
GTGGGCGCGCGGTCCGAGTGTCTGCGGCTCTGCTGTGAGACAGACTCCTGTGACGTCTTC
GTCTTCGAAGAGAAGAGTCCTGGCAGCTGCTACCTGTTCAGCTGCGGCCCGCCCGAGGAC
TTCCGCTGTAAGTTCACGGCTCACGGGAACTTCAGCAGCGGCGTGCTGGCCATCAGCCGC
CGCCTCGCCGAGCTTCAGGACAGTGAGCGACTCGCAACGCACGAGAGAGAACTGGCCAAC
TTACGGAACCCCACCAGCACGACACTGACCACGACCCTGGCGGCGCGCAGGACGGAGCCT
CCGCCGCCCCAGCCGCCCCAGTCGCCCACAGCTAGACCCTGCAGTCGCTACCAGTTCGAG
TGTCGTCGCGGCGGCGAGTGTATCGCCGTGTACAACGCCTGCGACGGCGTGCCGCAGTGC
GCGGACGGCAGTGACGAGGCGCCCGAGCTGGACTGTCCTACGTCACCTCCGCCTCCGTCA
CCGCCGGCGTCTCCCCTGCCGCCCGCTCCGCGTATGCCGCTCTCGCCGCCCTCCACGACC
TTAGCCTCGGTCGTCAGCAGACCGCCGCCGCCGCCCCTCACACAGGCTTTATCAGACAAC
CGGTTCACGGGGGTCGTGCCGGCAGAGGGCGACTTGCTCGACGGAGCGGAGTCCTGGCCG
AGGCGTCTGGCGCAGGCTCAGCCGCATCGATACGCGGGGGGCGGGGCGGCCGGAGCGGGC
GGATCGCACATCTTCAGTCACAAAGGCGGACTGCTCCAAGAGAGCTCCTTCGACCCGGCG
CTGCCTCCCGCCTGGCCGCGCCGGCCCTGGACTCCGCAGCTGACGGCTCCGGACATGGAG
TCGGAGCGCGCGTGGGGCGGGTACGGACGCGAATGGCCCGACGTGGAGCCCCGACGAGCT
TGGCCCGTGTCGCGGCCAGAGACCGACGTACAAATGTATTTATCTTCTAAAACTATGCCG
GAAATGCCCATGATATATTCGAGTCAACAGCAGACGCTACGGGACGGACCCAAAAAAGGC
TTCGAGATAAGGAACAAAAACGCATTGGATTTCCCGAGCGAGCCTCCGCCGCGCCGTCTG
CCCCCCTCCACGCTCGACCTGAGAGAGGAGAACAGGCCTATAGTCTTAGAAAACACGACG
AAGAAGAAGCTTCTAAAAGAAAAGGTGATCGCTGACTCCGCAACTCCTCCGGAGGTGGAT
TTAAACAACGAACATCAAAATGTAGTAGCTGGCCGCGTCCCGGCTCCGAGCGGCGCAGAG
GCTGCGAGGGCCGCGGGGGGCGGCGGGAGTGCGGGGGTCGCGAGGGAGCCCGCCGCCCTG
CAGGCTCGCACGCGCTGGGCCAACGACGAGCACGACGGTCTCAGCGAGCACCCTCCCGCC
GCCGTGCTGCTGCTGGTTCTCGGTACAGCGCCTCCCCAGCAACTTCCCTCACCGCCCTCT
GGCCGCTCCCCCTCACCCCCTCCCCTGTGTTCCAGGCTCGCTGATGACGGCCTGCCTGGC
GGGCCTGGCCGTGTGCCGCGCGCGAGCCTCCCGCCGCCGCCGCCGCTCTCACCCGCGCCT
GGCGCTGGACGCCGATTACCTCGTCAACGGCATGTACCTGTAGCGGCTCGAGGCCTGGGG
AGGTCGGGGAGCTGGGATCGCAGCTTGAGTCCATCGAGCTGTGCCATTTCATTTTCTTAC
CTGTTTCATGTATCCATCCGAAAACGAGACAATCTGATAAAGAAACGGTCGGCTGTAGGT
GATGGTACAACTCGCCTCGCCGACAGACAGGATCGTCTCTTCTTCACAAGGACGACATCC
ATCCATGAAACCCAGCTAGTCCATGTGGGTCTTGAAGACGTTGGAACCTGGAACCGTCAC
GGGCGGACTGTTCGTCCGCCTTCCGATGTACATTACGAGCTAGGGTCTCTCTCTCTTCTA
GCCAGGGCTACCATCGGGCATGAGAACCCTCGCCTGTCATCACCGGAGAGTCACACTTGT
ATCAGAAACCTTTATGACTGTCAGCTAGCTACGGCTGGTAAGACTGAGAAAACGGTCGCA
ACACTAATTTCTTTTTACCGGCGCCTTAGGCAAAGATTCATCCTATGGTTTACAGAACAG
TTAAGATATTCGAGAGCTGTGATCGACTCGCCTGGAGACAAGTAG
Protein sequence:
MCGSELVRELPHNTTRGHCRGRREGVSTHTTPELEEQRHRTSGELVGTDEEPGVSESQSS
LGDAPGHLALTAAARSVNDTIPGKPACYHTVSVPSARAVSLCRESARMRAIIDHRTYKAS
EIVSKVSNVCVDTSVGEETSYMTVIVMGTRAWVWWLVVGAACSRELDPGSCVARFDVQRD
KIIRTEESREMGARYLSELDVGARSECLRLCCETDSCDVFVFEEKSPGSCYLFSCGPPED
FRCKFTAHGNFSSGVLAISRRLAELQDSERLATHERELANLRNPTSTTLTTTLAARRTEP
PPPQPPQSPTARPCSRYQFECRRGGECIAVYNACDGVPQCADGSDEAPELDCPTSPPPPS
PPASPLPPAPRMPLSPPSTTLASVVSRPPPPPLTQALSDNRFTGVVPAEGDLLDGAESWP
RRLAQAQPHRYAGGGAAGAGGSHIFSHKGGLLQESSFDPALPPAWPRRPWTPQLTAPDME
SERAWGGYGREWPDVEPRRAWPVSRPETDVQMYLSSKTMPEMPMIYSSQQQTLRDGPKKG
FEIRNKNALDFPSEPPPRRLPPSTLDLREENRPIVLENTTKKKLLKEKVIADSATPPEVD
LNNEHQNVVAGRVPAPSGAEAARAAGGGGSAGVAREPAALQARTRWANDEHDGLSEHPPA
AVLLLVLGTAPPQQLPSPPSGRSPSPPPLCSRLADDGLPGGPGRVPRASLPPPPPLSPAP
GAGRRLPRQRHVPVAARGLGRSGSWDRSLSPSSCAISFSYLFHVSIRKRDNLIKKRSAVG
DGTTRLADRQDRLFFTRTTSIHETQLVHVGLEDVGTWNRHGRTVRPPSDVHYELGSLSLL
ARATIGHENPRLSSPESHTCIRNLYDCQLATAGKTEKTVATLISFYRRLRQRFILWFTEQ
LRYSRAVIDSPGDK