New model in OGS2.0 | DPOGS201600  |
---|---|
Genomic Position | scaffold1221:+ 37110-41958 |
See gene structure | |
CDS Length | 972 |
Paired RNAseq reads   | 631 |
Single RNAseq reads   | 1534 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA012212 (7e-08) |
Best Drosophila hit   | CG5498 (2e-15) |
Best Human hit | charged multivesicular body protein 7 (5e-21) |
Best NR hit (blastp)   | charged multivesicular body protein, putative [Ixodes scapularis] (4e-29) |
Best NR hit (blastx)   | charged multivesicular body protein, putative [Ixodes scapularis] (8e-30) |
GeneOntology terms    | GO:0000815 ESCRT III complex GO:0008565 protein transporter activity GO:0015031 protein transport GO:0045324 late endosome to vacuole transport |
InterPro families   | IPR005024 Snf7 |
Orthology group | MCL11466 |
Nucleotide sequence:
ATGGGTTTAAGTGAGTGCGGTATTCCCGAAGACAAGCTTCCACCATGCTGGTCGGATGAT
GTGCGAATGAACGCGTTATTCGCACCGTTCAGGCTGAAAGTCGCGAATCCTGAATCCTGG
GATATGAAGATGAAATTCTGGTCAGACATGGTGCGGCAGTGGTGTAGGTGTAAAACGGAC
CCGATCGTGTCTGCTGCAGATGTCAGAAGCGTGTTCCAAAGGAGAGGAAGGACCGCTGCA
TGTTTGGACATAGTCATAGAAGAGATGTATCATAATGGTGACCTGTCTCCCATATCAAAG
TATCAGCAGATACTCCACAACGGACCTGAGAGCTGGGTCCGTTGGGGAGCCCGGCTTGCC
TTCAAACCGGCTGCCATAGCCATCACTGCTGTCACATCACTGCTACCAGCAAGGCAAGCC
ACGGATAACAACGGTCTGCCAAAAGCGAGTATAGACTCCACACAGAGATTTGTTTTGGAG
AGTGCCGTCAAGGAGCAAGCTAATGAGCTGTTGAACAACTTCCCGGCTGGTTCGGAGAGA
ATTGGCACCATCGACGAGCTAATGAGATCCAGCGGTCACACTAATAGAGAGGTCTATGAA
GTTCTCCTGGGTTACTTGGTGTCCCAGGGTATGGCCGTCAAGAGTGGGGATGTCGTGAAA
ATAGCGGAACCAAACAAAAAAGTCCAGCCGGTTACGGAAATGGACACGGCGATGGTGAAA
CTGATGTCCGCGGAGACGCGGCTGTCCGACGACGTCGCGCGACTGTCGCGAGACGTGTCC
GTCGCGGAGTCTGAGGCGAGGGCCGCCATGAAGCTTGGCAACAAGATCGCTGCTAAGAAC
CACCTCAGGAGGAAGATGAGGACCCAGCAGAAGCTGCAGCAGTGTGAGGCAGCGCTTGAG
AACATCAAGGAGCTCATGTTGCAGGCTAGGAACAGTGACGTCACATCCGCCGTCGTAGAT
ACATACAGGTGA
Protein sequence:
MGLSECGIPEDKLPPCWSDDVRMNALFAPFRLKVANPESWDMKMKFWSDMVRQWCRCKTD
PIVSAADVRSVFQRRGRTAACLDIVIEEMYHNGDLSPISKYQQILHNGPESWVRWGARLA
FKPAAIAITAVTSLLPARQATDNNGLPKASIDSTQRFVLESAVKEQANELLNNFPAGSER
IGTIDELMRSSGHTNREVYEVLLGYLVSQGMAVKSGDVVKIAEPNKKVQPVTEMDTAMVK
LMSAETRLSDDVARLSRDVSVAESEARAAMKLGNKIAAKNHLRRKMRTQQKLQQCEAALE
NIKELMLQARNSDVTSAVVDTYR