New model in OGS2.0 | DPOGS202328  |
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Genomic Position | scaffold108:+ 31969-32796 |
See gene structure | |
CDS Length | 828 |
Paired RNAseq reads   | 386 |
Single RNAseq reads   | 1018 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA004994 (1e-142) |
Best Drosophila hit   | RNA polymerase II 33kD subunit (4e-124) |
Best Human hit | DNA-directed RNA polymerase II subunit RPB3 (1e-107) |
Best NR hit (blastp)   | DNA-directed RNA polymerase II polypeptide [Bombyx mori] (1e-156) |
Best NR hit (blastx)   | homologue of DNA-directed RNA polymerase II subunit [Antheraea pernyi] (4e-144) |
GeneOntology terms    | GO:0003899 DNA-directed RNA polymerase activity GO:0005665 DNA-directed RNA polymerase II, core complex GO:0006366 transcription from RNA polymerase II promoter GO:0046983 protein dimerization activity GO:0003677 DNA binding GO:0005875 microtubule associated complex |
InterPro families    | IPR011262 DNA-directed RNA polymerase, insert domain IPR001514 DNA-directed RNA polymerase, 30-40kDa subunit, conserved site IPR009025 DNA-directed RNA polymerase, RBP11-like IPR011261 DNA-directed RNA polymerase, dimerisation IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type |
Orthology group | MCL14010 |
Nucleotide sequence:
ATGCCGTACGCAAATCAACCATCAGTACATATAACAGAATTAACAGACGACAATGTTAAA
TTTGTCGTCGAAGATACAGAGCTCAGCGTTGCCAACAGCATGCGACGAGTTTTCATAGCA
GAGACGCCGACAATGGCTATTGACTGGGTTCAACTGGAAGCAAACTCAACAGTTCTAAGT
GACGAATTCCTCGCTCATCGTATTGGTTTAATACCCCTGATATCTGATGACGTCGTTGAT
AAAATACGTTACTCCAGGGACTGCATGTGTGCAGATTTCTGTACTGAATGCAGTGTGGAA
TTTACATTGGATGTAAAGTGCACTGGCGATCAAACAAGACATGTGACAACTGCTGATTTA
AAATCTAGTGACCCACGAGTGGTGCCGGTCACTTCACGCCATAGAGATGAAGACCAGGCA
GATTATGGTGAACTTGATGAAATCTTGATTATCAAGCTACGTAAGGGACAAGAATTAAAG
TTGCGAGCATATGCCAAAAAGGGGTTCGGAAAAGAGCATGCCAAATGGAATCCAACATCC
GGTGTGTGTTTTGAGTATGATCCTGACAATATAATGAGACATACATTATACCCAAAGCCA
GACGAGTGGCCGAAGAGTGAGCATACAGAGCTGGATGAGGATCAGTATGAAGCTGATTTC
AACTGGGAAGCAAAACCAAACAAATTCTTCTATAATGTAGAATCCTCGGGAGCATTGAAA
CCGGAGAATATAGTGTTGATGGGCATTGTTGTATTAAAAAATAAACTTCTAAACTTACAA
GTTCAACTAGCACAAGAAACACAAAACGATGCTCTAGCTATTAATTAA
Protein sequence:
MPYANQPSVHITELTDDNVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLS
DEFLAHRIGLIPLISDDVVDKIRYSRDCMCADFCTECSVEFTLDVKCTGDQTRHVTTADL
KSSDPRVVPVTSRHRDEDQADYGELDEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTS
GVCFEYDPDNIMRHTLYPKPDEWPKSEHTELDEDQYEADFNWEAKPNKFFYNVESSGALK
PENIVLMGIVVLKNKLLNLQVQLAQETQNDALAIN