DPGLEAN16297 in OGS1.0

New model in OGS2.0DPOGS202328 
Genomic Positionscaffold108:+ 31969-32796
See gene structure
CDS Length828
Paired RNAseq reads  386
Single RNAseq reads  1018
Migratory profilesQuery via corresponding ESTs
Best Bmobyx hitBGIBMGA004994 (1e-142)
Best Drosophila hit  RNA polymerase II 33kD subunit (4e-124)
Best Human hitDNA-directed RNA polymerase II subunit RPB3 (1e-107)
Best NR hit (blastp)  DNA-directed RNA polymerase II polypeptide [Bombyx mori] (1e-156)
Best NR hit (blastx)  homologue of DNA-directed RNA polymerase II subunit [Antheraea pernyi] (4e-144)
GeneOntology terms




  
GO:0003899 DNA-directed RNA polymerase activity
GO:0005665 DNA-directed RNA polymerase II, core complex
GO:0006366 transcription from RNA polymerase II promoter
GO:0046983 protein dimerization activity
GO:0003677 DNA binding
GO:0005875 microtubule associated complex
InterPro families



  
IPR011262 DNA-directed RNA polymerase, insert domain
IPR001514 DNA-directed RNA polymerase, 30-40kDa subunit, conserved site
IPR009025 DNA-directed RNA polymerase, RBP11-like
IPR011261 DNA-directed RNA polymerase, dimerisation
IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type
Orthology groupMCL14010

Nucleotide sequence:

ATGCCGTACGCAAATCAACCATCAGTACATATAACAGAATTAACAGACGACAATGTTAAA
TTTGTCGTCGAAGATACAGAGCTCAGCGTTGCCAACAGCATGCGACGAGTTTTCATAGCA
GAGACGCCGACAATGGCTATTGACTGGGTTCAACTGGAAGCAAACTCAACAGTTCTAAGT
GACGAATTCCTCGCTCATCGTATTGGTTTAATACCCCTGATATCTGATGACGTCGTTGAT
AAAATACGTTACTCCAGGGACTGCATGTGTGCAGATTTCTGTACTGAATGCAGTGTGGAA
TTTACATTGGATGTAAAGTGCACTGGCGATCAAACAAGACATGTGACAACTGCTGATTTA
AAATCTAGTGACCCACGAGTGGTGCCGGTCACTTCACGCCATAGAGATGAAGACCAGGCA
GATTATGGTGAACTTGATGAAATCTTGATTATCAAGCTACGTAAGGGACAAGAATTAAAG
TTGCGAGCATATGCCAAAAAGGGGTTCGGAAAAGAGCATGCCAAATGGAATCCAACATCC
GGTGTGTGTTTTGAGTATGATCCTGACAATATAATGAGACATACATTATACCCAAAGCCA
GACGAGTGGCCGAAGAGTGAGCATACAGAGCTGGATGAGGATCAGTATGAAGCTGATTTC
AACTGGGAAGCAAAACCAAACAAATTCTTCTATAATGTAGAATCCTCGGGAGCATTGAAA
CCGGAGAATATAGTGTTGATGGGCATTGTTGTATTAAAAAATAAACTTCTAAACTTACAA
GTTCAACTAGCACAAGAAACACAAAACGATGCTCTAGCTATTAATTAA

Protein sequence:

MPYANQPSVHITELTDDNVKFVVEDTELSVANSMRRVFIAETPTMAIDWVQLEANSTVLS
DEFLAHRIGLIPLISDDVVDKIRYSRDCMCADFCTECSVEFTLDVKCTGDQTRHVTTADL
KSSDPRVVPVTSRHRDEDQADYGELDEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTS
GVCFEYDPDNIMRHTLYPKPDEWPKSEHTELDEDQYEADFNWEAKPNKFFYNVESSGALK
PENIVLMGIVVLKNKLLNLQVQLAQETQNDALAIN