| New model in OGS2.0 | DPOGS215811 |
|---|---|
| Genomic Position | scaffold1829:- 22529-24054 |
| See gene structure | |
| CDS Length | 1281 |
| Paired RNAseq reads | 226 |
| Single RNAseq reads | 563 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | ND |
| Best Drosophila hit | nufip (4e-07) |
| Best Human hit | nuclear fragile X mental retardation-interacting protein 1 (6e-11) |
| Best NR hit (blastp) | hypothetical protein TcasGA2_TC014675 [Tribolium castaneum] (3e-39) |
| Best NR hit (blastx) | hypothetical protein TcasGA2_TC014675 [Tribolium castaneum] (2e-33) |
| GeneOntology terms | GO:0030674 protein binding, bridging GO:0022626 cytosolic ribosome GO:0048786 presynaptic active zone GO:0045944 positive regulation of transcription from RNA polymerase II promoter GO:0030515 snoRNA binding GO:0042802 identical protein binding GO:0008023 transcription elongation factor complex GO:0005726 perichromatin fibrils GO:0070761 pre-snoRNP complex GO:0005730 nucleolus GO:0000492 box C/D snoRNP assembly GO:0005622 intracellular GO:0008270 zinc ion binding GO:0016363 nuclear matrix GO:0005634 nucleus |
| InterPro families | IPR007087 Zinc finger, C2H2-type IPR019496 Nuclear fragile X mental retardation-interacting protein 1, conserved domain IPR015880 Zinc finger, C2H2-like |
| Orthology group | MCL17529 |
Nucleotide sequence:
ATGTATCCTGAATCCATCCATACAAATTTGAGCAGACCTCATGCACCTTGGAATCAAAAT
GGTCCACAGGGACAGTATTATAAGGGAAATAACCCTGGCCAGGCTAGGTGGCAACAACGG
AGTACGAATACCTTCCAAAATGAAGATTTCAAATTTTGGTGTGAAACCTGTGATAAAGGC
TTTAGATTCGCCAATCATCTAGAAAATCATAAACTTCAACATCAAAAATGTAACATAGAT
GGTTGTCAGTATGTAGCTCATCCAAAAGTTATTACCAGACACATTCAAATGCAACATTCC
AGTGGTTTGTTTAATAAGATATCTAAATTAAACAACCCAGAGGAAATAACAAAATGGAGG
GAAGAAAGAAGGATGAAATACCCAACAAAAGAAAATATTGAGAAGAAAAAAGCTGAAATT
AATGAGAGAATTAAAAGAGGTGAAAAAATGGGATTGAGACATGAAAAAGGCAAGAAGAGA
AGTGACACAAAAGATTTTGCAAATAAAAGAAAACAAAATGTAGCAGGACCAAAAGTCAAT
GGTAAGAAAAGAAAATGTAAATTTGATGTGACAAAACAACATGAGCAAAATAAGAAAATA
TGTAAAGAAATGCCTCCTACAGAAGAAAAAAGAACATTAAAACCATTTGCCGGCATTCGG
CTCTTATATGAAGATGAGCAAGAAGAGATTACTGAGGTAACAACAAATTCCCTTATAGAA
GATGTTGATGAATTTGTAGAAAAAATTGTAGAAAACAAAGAAAAGAAAACTGAACCTACA
ATATGTGGGGCTTTAACATCTTTGATGTGCCAATACTGCTCTTCTGATGAAGAAGAATTC
ATAGAACATAACACAAAATTAATATCAAATCATAACATTGAATCTTCAAGTACAACAATG
GTCGATAACAATAGTGATAGCAAATTAAATGGCAATACTAAACTGAATATGGATAGAAAC
AATCCAAATGAAACATTTACAAACAAAGAAAAAGTCCTGGAGAGTGATAACGACAGTGGG
CCAGAAGAAATGAGCATAGTAAAGAATGAAAATAGTACAGTGCCTATCCAAACCAAAACA
AAAAGCAAAGCCAAGAATAAAAAAAATAATTTGCCAAAAACCAACCAATCTAGACACATG
AATTCAGTTCAAAAGAAAAGAAAACTCCCTTCAACCCTCTTAGAAAAATTACTACACAAG
GAAATACACAATGAAAGAAACATAGTTCTTCAATGCATTAGACATATAGTTGATAACAAC
TTTTTTGATAATGAAAAATAA
Protein sequence:
MYPESIHTNLSRPHAPWNQNGPQGQYYKGNNPGQARWQQRSTNTFQNEDFKFWCETCDKG
FRFANHLENHKLQHQKCNIDGCQYVAHPKVITRHIQMQHSSGLFNKISKLNNPEEITKWR
EERRMKYPTKENIEKKKAEINERIKRGEKMGLRHEKGKKRSDTKDFANKRKQNVAGPKVN
GKKRKCKFDVTKQHEQNKKICKEMPPTEEKRTLKPFAGIRLLYEDEQEEITEVTTNSLIE
DVDEFVEKIVENKEKKTEPTICGALTSLMCQYCSSDEEEFIEHNTKLISNHNIESSSTTM
VDNNSDSKLNGNTKLNMDRNNPNETFTNKEKVLESDNDSGPEEMSIVKNENSTVPIQTKT
KSKAKNKKNNLPKTNQSRHMNSVQKKRKLPSTLLEKLLHKEIHNERNIVLQCIRHIVDNN
FFDNEK