New model in OGS2.0 | DPOGS201347  |
---|---|
Genomic Position | scaffold1450:- 11355-15684 |
See gene structure | |
CDS Length | 963 |
Paired RNAseq reads   | 651 |
Single RNAseq reads   | 2875 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA003132 (1e-124) |
Best Drosophila hit   | CG10026, isoform B (3e-70) |
Best Human hit | clavesin-1 (7e-38) |
Best NR hit (blastp)   | PREDICTED: similar to CRAL/TRIO domain-containing protein [Nasonia vitripennis] (4e-92) |
Best NR hit (blastx)   | PREDICTED: similar to CRAL/TRIO domain-containing protein [Nasonia vitripennis] (2e-91) |
GeneOntology terms    | GO:0008431 vitamin E binding GO:0016918 retinal binding GO:0006810 transport GO:0005622 intracellular GO:0005215 transporter activity |
InterPro families    | IPR001251 Cellular retinaldehyde-binding/triple function, C-terminal IPR001071 Cellular retinaldehyde binding/alpha-tocopherol transport IPR011074 Phosphatidylinositol transfer protein-like, N-terminal IPR008273 Cellular retinaldehyde-binding/triple function, N-terminal |
Orthology group | MCL12316 |
Nucleotide sequence:
ATGCAGAAGGATTCGAATTTGCATAAAGAAATCGGAATGCCGACTCCAGATTACAACGTT
GACTTAGACCTGGGCGAGCCTCCGCCAGAACTACAGGAGTACGCCCGCCTCCAGTGCGGC
GAGGACCCGAACACAAAACTGCAAGCTATATACGAACTCCGAGATATGATATACGAGCGG
GGTGAATGCACTCCAAAACGCATGGACGATGAATACCTGCTTAGGTTTTTACGAGCTCGG
AATTTTATCCCGCAAAGAGCGCACAGACTGATGGTGAATTATCACCAGTTCAAAGAAGAC
AATCCAGAGTTATTCGAGAACGTATATCCCCTGGATTTACGGAGGATTGGAGACACCAAC
GTCATGGCTGTACCGCCATATCGTGATCAAAATGGTCGCAGACTTTTGCTTTATAGAATT
GGATCCTGGGACCCCAAATCTGTTGCTGTGGAAGATATGCTGAAGGCGACAATATTCGCC
TTGGAGCTCGGATTGTTGGAGCAGCGAACCCAAATTCTGGGTGGAATAGCTTTGTTTGAT
TTGGAAGATTTAGGTACACAGCATTTGTGGCAGGTCACGCCGTCGGTTGCGAGCAAAATT
ATTAAACTTTTAGTCTCAAGTTTTCCCGCAACCACTCACGCCATACATATAATTAACCAT
TCTTGGATATTCGATAAAATGTACAGCATATTCAAACCGCTACTGACAGCGCAAATGCGC
TCGAGAATCTTCTTCCACGGATATGACGTCACATCCCTTCACGAGCACATCCAGCCGGAC
TACCTTCCGGAACGGTATGGTGGTGTATGGCCCGACTATCCGTATACCATCTGGCTCGAA
TCTTTGAAGAAAAATTACACCGTTGCCAAACAGGTACTGGCGCTCGGGTATAAGTTCCGC
GAAGAGGAGGTTTGTCCCGAAGTCGTTAGAAGACTAAAGGAGGAAGGTATAAAATTATCG
TGA
Protein sequence:
MQKDSNLHKEIGMPTPDYNVDLDLGEPPPELQEYARLQCGEDPNTKLQAIYELRDMIYER
GECTPKRMDDEYLLRFLRARNFIPQRAHRLMVNYHQFKEDNPELFENVYPLDLRRIGDTN
VMAVPPYRDQNGRRLLLYRIGSWDPKSVAVEDMLKATIFALELGLLEQRTQILGGIALFD
LEDLGTQHLWQVTPSVASKIIKLLVSSFPATTHAIHIINHSWIFDKMYSIFKPLLTAQMR
SRIFFHGYDVTSLHEHIQPDYLPERYGGVWPDYPYTIWLESLKKNYTVAKQVLALGYKFR
EEEVCPEVVRRLKEEGIKLS