| New model in OGS2.0 | DPOGS212813 |
|---|---|
| Genomic Position | scaffold344:+ 19232-26759 |
| See gene structure | |
| CDS Length | 3588 |
| Paired RNAseq reads | 2298 |
| Single RNAseq reads | 5366 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA000757 (2e-07) |
| Best Drosophila hit | CG5728 (1e-39) |
| Best Human hit | protein RRP5 homolog (2e-50) |
| Best NR hit (blastp) | programmed cell death protein 11 [Culex quinquefasciatus] (2e-72) |
| Best NR hit (blastx) | PREDICTED: similar to programmed cell death protein 11 isoform 1 [Apis mellifera] (1e-62) |
| GeneOntology terms | GO:0003723 RNA binding GO:0005515 protein binding GO:0005634 nucleus GO:0006364 rRNA processing GO:0005730 nucleolus GO:0008134 transcription factor binding GO:0006397 mRNA processing GO:0005829 cytosol GO:0005622 intracellular |
| InterPro families | IPR003029 Ribosomal protein S1, RNA-binding domain IPR016027 Nucleic acid-binding, OB-fold-like IPR022967 RNA-binding domain, S1 IPR003107 RNA-processing protein, HAT helix IPR012340 Nucleic acid-binding, OB-fold IPR011990 Tetratricopeptide-like helical |
| Orthology group | MCL14490 |
Nucleotide sequence:
ATGACTGAGACCGAAGAATACTTCCCTCGTGGTGGTAAAAAACCTACGACTACATATTTT
AAGCAAAGTGAAAACTTTTTAGGAGCTCCGGATAAGGGAGAGAAGAAGAGGAAAAGACAA
AAAAAGAAATCTGAAGATGATGATGGCTACTTATCAGATGATTTTACACAAGAAATTGAT
CAATCTTACAAAACTTGTGGAATATTTTTAAATTATAGGGTTGTGAAAGAAGGTCTGCTA
TTGTTAGGAAGAGTGCGACGAGCTCTTGAAACTAAAATATTGGTATCATTACCATGTAGA
ATGAGTGGTGTGGTCATGGCTTGTCACATTAGTGATGCATTCAATAACATACTGGAAGCT
TATGTCAATGATAAGGTGGACCAAGTCCGCGAGCTGCCGCAAATGTTTCGACTGGGACAG
TATGTAGCTGTGAAAGTCTTGGAGGCATCAGACAATTCACTAACACTTACAATGATGCCA
CAAGACATTAATTCCGATAGAAAAGCTACGGATCTCCACAAAGGAGCACTTATCCAAGCT
GCGGTCACATCAATTGAAGACCACGGCTATGTAATGGACATTGGCATCCCTAACACTAGA
GCCTTCTTGGCTAAAGATACTGCAAACTCAGACATGGAACTCGATATTGGTATGCTGACA
TGGGTGACCATCAAATCTCTGTCCGCTGACTCCAACGTCGTCACCCTGAGCTCCGAGCTG
GGCGCTCTGCAGCGATCCTTCCAGAGGAATCCAGGTGTTATATATCCTGGAACCGCTGTG
GATTTCACCGTACATAAGGCTCTGGACAACGGTATCGAGGGACACATCTTGAACAATCAA
CTCGCGTACATACAAAGACATCAAATAGACACTGTGAAGGGAAAGAAGCCGGCGCTGGGA
CAAAAGATCAGAGCCCGTCTGCTGTACTCCGTCCCACCGCAGCAGACCCCATTCTTAACT
ATGAGAGAAATATTCGACTCCTCAAAAACAAACTTGAACGAGGAACAGATACACCAGGAC
GGTGACGTCATCGAGGAGGCAAAGGTGTTGAAGAGTTGGGGGCGCACAGTGTTCCTCCGC
TTGTCAGATCGCTCCACCGGCTTCCTCTCCTTAAGACGAGGCCATGACTTCAACGACCAC
GACGACCTCGCTAAGTCATACCCAATAGGCAGTACCCATCGCGTGCGCGTCCTGTGTTAC
AATCTGTCGGACTACGTGTACTCTGTGAGCGACGACCCCGCCCTCTTGCGGCAGAAGTAC
TTCAACATCTCACAGCTGAGTGTGGGGGAGCTGGTCTCCGGGACCGTCACCGAGGTCGCC
GACCAACACCTCAGGGTCGCGGTGGACCGGATCAGCGGCTACGTTCCCCGCGCGCACATG
ACGGAGACCGGCGTGTTCATTGATCCCAAAAAGCCGAGGAATTCAAATGTATCCAAGAAA
TATAAGGTGGGTCAAGAGGTCCAGGCGCGGGTGCTGGTCGTGGACGAGACCAAGAACTCT
GTGGTGTTGACCTTGAAGCCGTCCCTGCTGGCGGAGGACCTGCCTCTACTGATGGATTAC
AGTGAGGCGCACGTCGGCAAGATGTACACCGGGGTTATATCGCACATAAAACATTACTTG
CTGGTGTCGTTCTTCAACAACGTGGTGGCGTATGTACCGAGCCGGTTGGTGGGGGCGCAG
CCCGGGGACCTCGCTGACGCCTTCCACACGGGACAGATCGTGAAATGTACCATAATGTCT
GTTAAACCGGAAGCTAAAAAGATGTCTGGCAGCCTCGTCGACGCGCCTTTCCAGGACGCT
GACAATGAAGTTAAGAAGGCAATTAAACGGAAAAATGAAAGTTACGGCAACCAGGGAAAC
AGCTCAGATACAGACAAACATAACGAGCAGCCAGAAGATAAGATTCAGAAGAAGAAGAGA
AAGAAGAATAATGAAGAGAAGTTGAAGACAGATAGGAATTTAAATGAAGAAGCGAATTGT
GATGAAACAGAAATGGTAAGCGAAAAAAACGATAAGACTGACGTCAAGAGTCCAGAGAAG
ATCAAGAAAAATAAAAAACGTGAAGATAAGGTTGCGACAAACAAGGAAAGTGAAACGAAA
GGTGCCAAAAATAAAAACGAAAAAGAAAATATAAATAAGAAGGAGCTGAAGAAACAGCAA
AAGAACAAAGATAATAAAAAAAATAAAATCAAACGGAAATCTGAAGAAAGTCACGAAACA
CAGGATGGTGTGCCGACGCTGAACCCGATAGAGCTGAGACTCGTGGATTTAAGCGACTGC
GACACAGAGAAGCATTACAAGAAGAGGGTCGTCTCTCTGATGAAAGCGATAAATGCGAGA
CTACATCGCATAGAACGCGTGGACAAGAAAATGGCTGCTTTACAGGGCGTAGGCCCCGAT
CCCAAGAAAATGCTTTTACGGTCAGAAATGCATTTGGAGAAAACGAATAATGAAGACAGA
TTAAAGTTATTTATGAAAGCTCTGAGAGAGGCGGAGAAGAAATTAAGTGAATTTAACAAA
GATTCTGAGATCGACAACCCAAAAGAAGCTAAAGTAAAGGGAAATAGGATCCTGAAAATA
CCGAGCGCTAAGGAGTTTTGGAAGGTCTCGGAGAAGACGGAGGTTGTTCAAGATGACTCC
AGCAGCAGCGATGATGAGGAAGAAGAGAAGCCTAAGAAGAAGCGTAAAAAGTTATCAGCA
GCAGAAAAAGCAGCCAAAGTCAGAGAAGAGGAGGAGAGATTGCGAGAAATGGAAAAGAGA
GCGATAGACAGCGAGAGCTCTCCGCGCTCCAGCGAACAGTTCGAGAGAGCTCTCCTCGCA
CAGCCTGACTGTAGTCAGCTGTGGATAGCGTACATGGCATTCCATTTACAGGCGACAGAA
ATAGAAAAAGCGAGGGCGGTCGCTCGCAAGGCGCTGAACACAATCAACTTCCGGGAGGAG
GGCGAGAAGCTCAACGTGTGGCTCGCGCTACTCAATCTGGAGCATCGCTTCGGAACCAAG
GAAACTCAACAAAAAACCCTGGAAGACGCGCTACAAATGAATGACACGTACAGCATTCAC
TCCAAGCTGCTGGACATTCTGGTGGAGACCAGTAAACAACAGGAGCTGACGGCCTTAGTA
GAGCTGATGATGAGGAAGTACAAGACCTTGGAGTCGTACGTGGCGTGCGGAGAAGCTTGT
TACAAGTCGGGCATGGTGGAGAAGGCGAGGCACGTCATGCAGAGAGGCATAGTCGTGTTG
GAGAAGAAGGAACACGTATCCATGGTGGTGAAGTTCGCTGTGATGGAGCGGGCGCGGGGA
GTCCCCGACGGTCGGGAGAGATGTGAAGCGCTTCTGGAACAGATGCTGGCCACCTACCCT
CAGAGAGTGGACGTGATTGGGGTCTACTGCGACATGCTGTGCAAGGAAGGAGACGTCCAG
AGAGTCAGACAACTCATGGAGCGAATGACGGCGCAGAAGATGCCAGCGAGGAAGATGAAG
GTGTTGTACAAGAAGTGGATAGAAGTAGAACAGAAGATCGGAGACGAAGAACACGTGGAG
CTCGTGCGGCAGAACGCCTTGAAGTTCTTAGATAAAGCCAAATTCTGA
Protein sequence:
MTETEEYFPRGGKKPTTTYFKQSENFLGAPDKGEKKRKRQKKKSEDDDGYLSDDFTQEID
QSYKTCGIFLNYRVVKEGLLLLGRVRRALETKILVSLPCRMSGVVMACHISDAFNNILEA
YVNDKVDQVRELPQMFRLGQYVAVKVLEASDNSLTLTMMPQDINSDRKATDLHKGALIQA
AVTSIEDHGYVMDIGIPNTRAFLAKDTANSDMELDIGMLTWVTIKSLSADSNVVTLSSEL
GALQRSFQRNPGVIYPGTAVDFTVHKALDNGIEGHILNNQLAYIQRHQIDTVKGKKPALG
QKIRARLLYSVPPQQTPFLTMREIFDSSKTNLNEEQIHQDGDVIEEAKVLKSWGRTVFLR
LSDRSTGFLSLRRGHDFNDHDDLAKSYPIGSTHRVRVLCYNLSDYVYSVSDDPALLRQKY
FNISQLSVGELVSGTVTEVADQHLRVAVDRISGYVPRAHMTETGVFIDPKKPRNSNVSKK
YKVGQEVQARVLVVDETKNSVVLTLKPSLLAEDLPLLMDYSEAHVGKMYTGVISHIKHYL
LVSFFNNVVAYVPSRLVGAQPGDLADAFHTGQIVKCTIMSVKPEAKKMSGSLVDAPFQDA
DNEVKKAIKRKNESYGNQGNSSDTDKHNEQPEDKIQKKKRKKNNEEKLKTDRNLNEEANC
DETEMVSEKNDKTDVKSPEKIKKNKKREDKVATNKESETKGAKNKNEKENINKKELKKQQ
KNKDNKKNKIKRKSEESHETQDGVPTLNPIELRLVDLSDCDTEKHYKKRVVSLMKAINAR
LHRIERVDKKMAALQGVGPDPKKMLLRSEMHLEKTNNEDRLKLFMKALREAEKKLSEFNK
DSEIDNPKEAKVKGNRILKIPSAKEFWKVSEKTEVVQDDSSSSDDEEEEKPKKKRKKLSA
AEKAAKVREEEERLREMEKRAIDSESSPRSSEQFERALLAQPDCSQLWIAYMAFHLQATE
IEKARAVARKALNTINFREEGEKLNVWLALLNLEHRFGTKETQQKTLEDALQMNDTYSIH
SKLLDILVETSKQQELTALVELMMRKYKTLESYVACGEACYKSGMVEKARHVMQRGIVVL
EKKEHVSMVVKFAVMERARGVPDGRERCEALLEQMLATYPQRVDVIGVYCDMLCKEGDVQ
RVRQLMERMTAQKMPARKMKVLYKKWIEVEQKIGDEEHVELVRQNALKFLDKAKF