New model in OGS2.0 | DPOGS212816  |
---|---|
Genomic Position | scaffold344:+ 66311-67754 |
See gene structure | |
CDS Length | 726 |
Paired RNAseq reads   | 130 |
Single RNAseq reads   | 328 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA000760 (1e-102) |
Best Drosophila hit   | CG17209 (7e-59) |
Best Human hit | DNA-directed RNA polymerase III subunit RPC1 (4e-56) |
Best NR hit (blastp)   | AGAP004703-PA [Anopheles gambiae str. PEST] (4e-74) |
Best NR hit (blastx)   | AGAP004703-PA [Anopheles gambiae str. PEST] (1e-71) |
GeneOntology terms    | GO:0006383 transcription from RNA polymerase III promoter GO:0003899 DNA-directed RNA polymerase activity GO:0005666 DNA-directed RNA polymerase III complex GO:0003677 DNA binding GO:0008270 zinc ion binding GO:0032549 ribonucleoside binding |
InterPro families    | IPR007080 RNA polymerase Rpb1, domain 1 IPR015700 DNA-directed RNA polymerase III largest subunit |
Orthology group | MCL31120 |
Nucleotide sequence:
ATGCCTAAAGAGCAGTACCGAGAGACTTATGTCGGCAGAAAAATTTCCCATGTTACTTTT
AATGTGGATAGTGCAACGGAAATCCAGCAAGCAGCTCATATTCAAGTGATAACAAAGAAC
TTGTATGCTCAGGATGGACAGAGAGTACCAGCTAGCTATGGAGTGCTGGACAGACGCATG
GGGACAAACCAGAAAGATGCCAACTGTGAAACATGTGGTTTAGGTCTAGCTGAGTGTGTT
GGTCACTATGGCTATGTGGAACTAGCTCTACCGGTGTTCCATGTCGGATACTTCAGATCT
ATTATAACTATACTTCAGACTATTTGTAAGAACTGTGCCAAAGTAATGCTTCCGGATACA
ATCAAGAAATCGTTCAGTCGTAAATTCATGCATCCAGATTTAACCTACCTGCATAAAAAG
AATCTACGGGCAGCCGTTTTAAAGAAAGCCAAGACATGCACAAAATGCCCGTACTGTGAA
TCCCTAAATGGCATCGTAAAGAAGAGTCCAGCGGGAATATTGAAAATTATCCACGATAAG
TACAGAACAAAGAAACCCACAGACCCTGCGGTTCAAAAGGTGTTGAAAGATTTCAACGAG
GCCAAGGAATCTAATAAGGAACTGGCGTCCATGATTAACAGCGGCTTGATAATAGAAATG
AGCCCATTAGAAGTGAGTGTTATAACACTTTGTTATCTGACAAATGTTACCATCCTAGCT
CAGTAA
Protein sequence:
MPKEQYRETYVGRKISHVTFNVDSATEIQQAAHIQVITKNLYAQDGQRVPASYGVLDRRM
GTNQKDANCETCGLGLAECVGHYGYVELALPVFHVGYFRSIITILQTICKNCAKVMLPDT
IKKSFSRKFMHPDLTYLHKKNLRAAVLKKAKTCTKCPYCESLNGIVKKSPAGILKIIHDK
YRTKKPTDPAVQKVLKDFNEAKESNKELASMINSGLIIEMSPLEVSVITLCYLTNVTILA
Q