| New model in OGS2.0 | DPOGS207936 |
|---|---|
| Genomic Position | scaffold45:+ 132405-140586 |
| See gene structure | |
| CDS Length | 540 |
| Paired RNAseq reads | 149 |
| Single RNAseq reads | 393 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA000377 (5e-64) |
| Best Drosophila hit | lin-28 (5e-44) |
| Best Human hit | protein lin-28 homolog B (5e-31) |
| Best NR hit (blastp) | hypothetical protein TcasGA2_TC014742 [Tribolium castaneum] (3e-68) |
| Best NR hit (blastx) | hypothetical protein TcasGA2_TC014742 [Tribolium castaneum] (2e-68) |
| GeneOntology terms | GO:0003677 DNA binding GO:0006355 regulation of transcription, DNA-dependent GO:0008270 zinc ion binding GO:0005737 cytoplasm GO:0001708 cell fate specification |
| InterPro families | IPR016027 Nucleic acid-binding, OB-fold-like IPR002059 Cold-shock protein, DNA-binding IPR011129 Cold shock protein IPR001878 Zinc finger, CCHC-type IPR012340 Nucleic acid-binding, OB-fold IPR013084 Zinc finger, CCHC retroviral-type |
| Orthology group | MCL17001 |
Nucleotide sequence:
ATGAGCGGGAGGGAGGGCGGAAATGCAGTTCCGTCTTCGAGTGCGGGCGGCATCGCTGGC
GTAACGGGCGTGCCGCGGCGTGGTCGATGCAAGTGGTTCAACGTCGCAAAAGGATGGGGT
TTCATCACCCCTGATGATGGAGGCCAGGACGTTTTTGTTCACCAGAGTGTGATTCAAATG
ACGGGCTTCAGATCGCTGGGTGATGAAGAGGTGGTTGAATTCGAGTGCAAGGAGTCTGAC
AAGGGTTTGGAAGCTACGCGCGTTTGTGGACCATCCTCAGTCGACTGTCAGGGCTCTCAC
AGACGTCCGCTGAGTAAGAAGCGGTTTAGGAAGATACGCTGCTACAACTGTGGTGAGTTT
GCAAACCACATAGCTGCTAAGTGCAGTATAGGGCCACAACCAAAGAGATGCCACAATTGC
AAGAGCGAAGACCACCTCATTGCTGACTGTCCTATAAAGGTCGACAAGAAAAAGGACGAC
TCACAATCGAAGAACTCAGGCAGTTCCCAGGGGAGTCTGCAAGAGAGCCCGCAGCCGTAA
Protein sequence:
MSGREGGNAVPSSSAGGIAGVTGVPRRGRCKWFNVAKGWGFITPDDGGQDVFVHQSVIQM
TGFRSLGDEEVVEFECKESDKGLEATRVCGPSSVDCQGSHRRPLSKKRFRKIRCYNCGEF
ANHIAAKCSIGPQPKRCHNCKSEDHLIADCPIKVDKKKDDSQSKNSGSSQGSLQESPQP