New model in OGS2.0 | DPOGS214502  |
---|---|
Genomic Position | scaffold1137:+ 26728-39002 |
See gene structure | |
CDS Length | 3342 |
Paired RNAseq reads   | 504 |
Single RNAseq reads   | 1405 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA013403 (2e-06) |
Best Drosophila hit   | Ca[2+]-channel protein alpha[[1]] subunit D, isoform B (0.0) |
Best Human hit | voltage-dependent L-type calcium channel subunit alpha-1C isoform 14 (0.0) |
Best NR hit (blastp)   | Ca[2+]-channel protein alpha[[1]] subunit D, isoform B [Drosophila melanogaster] (0.0) |
Best NR hit (blastx)   | voltage-gated calcium channel alpha 1 subunit [Anopheles gambiae] (0.0) |
GeneOntology terms    | GO:0005891 voltage-gated calcium channel complex GO:0005245 voltage-gated calcium channel activity GO:0006816 calcium ion transport GO:0006936 muscle contraction GO:0042045 epithelial fluid transport GO:0016324 apical plasma membrane GO:0016323 basolateral plasma membrane GO:0009790 embryo development GO:0005509 calcium ion binding GO:0055085 transmembrane transport |
InterPro families    | IPR005821 Ion transport IPR014873 Voltage-dependent calcium channel, alpha-1 subunit, IQ domain |
Orthology group | MCL10088 |
Nucleotide sequence:
ATGTCCGATTTTGAAAACACAGTATACTATCCGCTTATAAAAAAAGCAGATTCTCCGCCC
AAGCGACAACCAACAATATCAGCTCGACCGAGAAGACTCTCCGAGGTGGAGATCAAGACC
CAGGAGAAGCCGATACCTGATGGCAGCAGCTTTTTCATCTTTTCTAAAACTAATTGGTTC
CGAGTCACGTGTTACAAAATCCAAAACAATTCTTGGTTTAGAAATTTGATTCTGCTTTGC
ATTTTGGCGTCGTCACTGATGTTGGCAATGGAAGATCCCGTTGGGAGGAAGGGCAATGAG
AACTGGAGTGAAATGCTTCGTAAGATCGACTACGTGTTCACAACCGTGTTCACGGTCGAG
CTGGTGTTGAAGCTGATCACCTACGGGTTCATCTTCCACAAGGACGCCTTCTGTCGGTCC
GCTTTTAACTTGTTAGATCTGCTGGTGGTCATCGTGTCGCTTATATCTTCGAGCGGTAAC
AATAATGTGTCATACATAAAGATTTTGAGAGTATTCCGAGTGTTGAGACCACTCAGAGCC
ATCAATAGAGCGAAGGGACTAAAGCACGTAGTTCAGTGCGTGATCGTTGCTATAAAAACG
ATAGGCAACATTTTGCTGGTGACCAATCTTCTTCAGTTCATGTTCGCTGTAATGGGGGTG
CAAATGTTCAAGGGTAAATTTTGTCAATGCACAGATAATTCCAAAGTGACGAGAGACGAG
TGTCAAGGTTCTTATCTGATATACGAAAATGGTTCACCAAAGATCAAAGACAGGGTATGG
ATACGGAATAAGTTTAATTTCGATGACGTCCTGAGTGGGATGTTGACTTTGTTCACCGTA
TCCACATTCGAAGGATGGCCGGGCTTATTGTCAACCTCAATGGACTCCAATGAGGAGAAC
CATGGGCCGGTAGAGAACTCTCGACCGCTGGTGGCGTTCTTCTATATCAGCTACATCATT
GTGATAGCATTCTTTATGGTTAATATTTTCGTGGGTTTCGTCATAGTAACATTCCAAAAG
GAGGGAGAACAGGAATTCAAAGATTGTGAACTTGACAAGAATCAAAGGAATTGTATCGAG
TTTGCCCTCAAAGCTAAACCTGTCAGGAGGTACATTCCCAAGCACCGCATCCAGTACAAG
ACCTGGTGGTTCGTGACGTCACAGCGCTTCGAGTACGTCATTTTCTTCTTCATCGTCCTG
AACACCATCGCTCTGATGATGAAGTATCACGACGCCAAGCCGGACTATAAAAGAGTCTTG
GATTATCTGAATATGATACTGACGACAGTTTTCATGTTGGAGTTCGTGTTTAAGTTGGCT
GCCTTCAGATTCAAGAACTACTTCGGTGACGCTTGGAACACGACTGATTTCATTCTGGTC
GTCGGTAGCATTATAGACATTGTTGTCACACAGGTTAATGAGTATAAAGAACCGAATGAG
TTCGGCTCAACGAAGGAAAGTAAAGAGGGAACACATTTAAAATACATAGCATTCTTCCGA
TTATTTCGTGCAATGAGACTTATAAAGCTACTGTCTCGGGGCGAGCGGATACGAACGTTA
CTGTGGACATTCATCAAGTCTTTCCAAGCCCTGCCGTATGTCGCCTTATTGATTGTCTTG
TTGTTCTTCATCTACGCGGTGGTCGGTATGCAGTTGTTCGGCAAAGTTCAGGAAGACGAT
GAAATAATCACGAGGAACAACAACTTCCAAACATTCGGCGGCGCCTTGATGGTGTTGTTT
AGATCAGCCACAGGCGAGGCATGGCAGGAGATAATGATGGCGTTGTCACCAAACGACTCG
GAGCACCCTGGCGAGCCGGTTGGCTGTCTGCATGATGAAGGGGATCCGCCCTCGGAGGAG
AGCTGCGGCACGCGCCTCGCATACCCTTACTTCATATCCTTCTCGTTGTTGTGTACTTTC
CTGATTATTAACTTATTCGTGGCTGTCATTATGGACAACTTTGATTATTTGACACGAGAT
TGGTCCATTCTCGGACCTCATCATTTAGACGAGTTTGTGAGACTTTGGAGTGAATACGAT
CCAGATGCTAAAGGAAGAATTAAACACCTGGACATAGTGACGTTGTTAAGGAAAATAAGT
CCACCGCTGGGTATGACTAGCTGTTTATCATACAACCCTCACAGGACAGCTTGCAAGCGT
CTCGTGTCCATGAACATGCCTCTCAACTCTGACGGTACCGTCAACTTTAACGCCACATTG
TTTGCCGTCGTAAGAACTCAGCTGCAGATAAAAACCACGGGTGTGATAGATGAATGCAAT
ACTGAATTACGAGCCATCATAAAGAAGGTATGGAAGAGGACCTCGCCGAAGCTCTTGGAC
CAGGTGGTACCACCTCCTGGGGATCCTAACGAGATCACCGTCGGGAAGTTTTACGCCACC
TTCCTCATACAAGATTACTTCCGAAGATTCCGTAAACGCAAGGAGCAAGCTGCTGCGGCG
TCGGTTCAGACGAACCAGATGACGTTACAAGCAGGTCTCAGGACGCTGCACGAGGCTGGA
CCGGAACTCAAGCGAGCCATCTCCGGGAACCTGGACGAGGTCGTCGCCGAAACCGTAGAA
CCAATGCATAGACGTAATCACACACTTTTCGGCGCGGTGTGGACGAGCATCAAGAAGGGG
CGGGAGAGCTTCTACCATCCCCCGCCCAATAGAGTCAAAACGACTTCGAATGGGAAGAAA
GAGGGTCAGTCGTTGAGTTGGATGATGCAGAGAGAGTTGGGCCTCGATGGAAAAATCCCA
GAAGATGAAAATAAATTCGAAGACATCAACCACAGTGACGGCGAAGAAGAGATAGCCATG
CAACCCTTACTGCACGGGAAGGACTCCGAGAGGATATTCAAAGTTATCGAAAAAACATCC
AACGATTTAATGCAGAGTTTGAGAAACAACTATCGTGACAGGATGCCACAAAACAGAAAC
AACGTGCCTTATTGTGTAGAAAACCCAGCGGAAAATCTTATTACTCGTGTTCTAACGGAG
CAGGGTCTGGGCAAGTACTGTGACCGTGAGTTCGTCGCCAGCACCACCCGGGAGATGCAG
GACGCCCTCGACCTCACGCAGGAGGAAATGGATGCCGCTGCTAATCAAATTATTTTGCAA
GAAAGAAACATGAACCGGTCCCAAAGGCCTGATGATGTGGTGAGTATCACGATTTACACT
TTGACGTCCTTTGAATGGTACGAAGTGACGTTATCCTATATTTCAGGAGAGCATTCTGTG
TCGTCAGTACCACCCGTTTCACCAGCCAGCCATTCATCCACCGGCGAAGCAGAAATAGAT
GAAGGGTCTCAGTGTTTGGTTCCGTCGTCCCTGGATGGTTGA
Protein sequence:
MSDFENTVYYPLIKKADSPPKRQPTISARPRRLSEVEIKTQEKPIPDGSSFFIFSKTNWF
RVTCYKIQNNSWFRNLILLCILASSLMLAMEDPVGRKGNENWSEMLRKIDYVFTTVFTVE
LVLKLITYGFIFHKDAFCRSAFNLLDLLVVIVSLISSSGNNNVSYIKILRVFRVLRPLRA
INRAKGLKHVVQCVIVAIKTIGNILLVTNLLQFMFAVMGVQMFKGKFCQCTDNSKVTRDE
CQGSYLIYENGSPKIKDRVWIRNKFNFDDVLSGMLTLFTVSTFEGWPGLLSTSMDSNEEN
HGPVENSRPLVAFFYISYIIVIAFFMVNIFVGFVIVTFQKEGEQEFKDCELDKNQRNCIE
FALKAKPVRRYIPKHRIQYKTWWFVTSQRFEYVIFFFIVLNTIALMMKYHDAKPDYKRVL
DYLNMILTTVFMLEFVFKLAAFRFKNYFGDAWNTTDFILVVGSIIDIVVTQVNEYKEPNE
FGSTKESKEGTHLKYIAFFRLFRAMRLIKLLSRGERIRTLLWTFIKSFQALPYVALLIVL
LFFIYAVVGMQLFGKVQEDDEIITRNNNFQTFGGALMVLFRSATGEAWQEIMMALSPNDS
EHPGEPVGCLHDEGDPPSEESCGTRLAYPYFISFSLLCTFLIINLFVAVIMDNFDYLTRD
WSILGPHHLDEFVRLWSEYDPDAKGRIKHLDIVTLLRKISPPLGMTSCLSYNPHRTACKR
LVSMNMPLNSDGTVNFNATLFAVVRTQLQIKTTGVIDECNTELRAIIKKVWKRTSPKLLD
QVVPPPGDPNEITVGKFYATFLIQDYFRRFRKRKEQAAAASVQTNQMTLQAGLRTLHEAG
PELKRAISGNLDEVVAETVEPMHRRNHTLFGAVWTSIKKGRESFYHPPPNRVKTTSNGKK
EGQSLSWMMQRELGLDGKIPEDENKFEDINHSDGEEEIAMQPLLHGKDSERIFKVIEKTS
NDLMQSLRNNYRDRMPQNRNNVPYCVENPAENLITRVLTEQGLGKYCDREFVASTTREMQ
DALDLTQEEMDAAANQIILQERNMNRSQRPDDVVSITIYTLTSFEWYEVTLSYISGEHSV
SSVPPVSPASHSSTGEAEIDEGSQCLVPSSLDG