Genomic Position | scaffold2864:- 11133-11966 |
---|---|
See gene structure | |
CDS Length | 834 |
Paired RNAseq reads   | 0 |
Single RNAseq reads   | 0 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA012158 (3e-47) |
Best Drosophila hit   | ND |
Best Human hit | tigger transposable element-derived protein 4 (4e-33) |
Best NR hit (blastp)   | PREDICTED: similar to tigger transposable element derived 4 [Acyrthosiphon pisum] (3e-41) |
Best NR hit (blastx)   | PREDICTED: similar to tigger transposable element derived 4 [Acyrthosiphon pisum] (3e-40) |
GeneOntology terms    | GO:0005634 nucleus GO:0003677 DNA binding GO:0045449 regulation of transcription GO:0000775 chromosome, centromeric region GO:0003676 nucleic acid binding GO:0005575 cellular_component GO:0003674 molecular_function GO:0008150 biological_process |
InterPro families   | IPR004875 DDE superfamily endonuclease, CENP-B-like |
Orthology group | ND |
Nucleotide sequence:
ATGGCAGGCGAAAAACGAAAATTGCTGGTTATAGGGAAGGCGAAAAAACCAAGGTGTTTA
AAGAATGTTAAAACTTTGCCAGTTGATTACGAAACGAACAAAAAAGCGTGGATAACATCG
GAGATTTTCGAAAAAGTTTTAAGGAAATGGGGCTCTGAGCTAAGAGGAAACAAAAAGAAG
ATCATTTTATTTATTGATAATTGTCCAGCTCACCCACAAATTCTAAATTTGACAAACATC
AGACTGGCATTTTTACCACTAAATACCACATCAGTTATTCAGCCTATTGATCAAGGTATA
ATTAAAAATCTTAAAAGCCATTATCGAAAGCTTCTAGTGGAAAAAATCATAAACGACACT
GGAAAAAGTAGTACCCCATTTGCCGTTAATCTTCTGAATGCCACTGAAATATTAACAACA
GCATGGGCAAGAGTAACTCCAGATACGATTAAAAAATATTTTTCACACGCTGCGTTTGGT
AAGTTTTCAATTTTAAATACAACTGCTTACGATTCTGGTGATGAATTGGACAATTTGCCA
TTTGCGAGACTATCATCAGCGGAACAGGGCCGGCCCGCCCTTATAGGCAAACTAGGCAAC
TGCCTAGGGCGCTCGTATTTGGGGGCGGCATCACCACTGAGCACGCGGGTCGATCAAAAA
TTGTTCAATCAATCGTACGTACGCGCGACAGACGTGCGGCGTGACGCGCATCGCAACTCG
CGGAGCGCGCCGCCACCGTCCCGTTCCCCGCCGCCCCCCACGCATGCCATCGCCGCCGCG
CCACCCGCGCACTCTAAACTATCTCATGTGTTCTCCGTCAACTCTATGCGCTAA
Protein sequence:
MAGEKRKLLVIGKAKKPRCLKNVKTLPVDYETNKKAWITSEIFEKVLRKWGSELRGNKKK
IILFIDNCPAHPQILNLTNIRLAFLPLNTTSVIQPIDQGIIKNLKSHYRKLLVEKIINDT
GKSSTPFAVNLLNATEILTTAWARVTPDTIKKYFSHAAFGKFSILNTTAYDSGDELDNLP
FARLSSAEQGRPALIGKLGNCLGRSYLGAASPLSTRVDQKLFNQSYVRATDVRRDAHRNS
RSAPPPSRSPPPPTHAIAAAPPAHSKLSHVFSVNSMR