| New model in OGS2.0 | DPOGS200357 |
|---|---|
| Genomic Position | scaffold1093:+ 35324-52737 |
| See gene structure | |
| CDS Length | 1851 |
| Paired RNAseq reads | 666 |
| Single RNAseq reads | 2009 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA005650 (0.0) |
| Best Drosophila hit | ND |
| Best Human hit | poly(A)-specific ribonuclease PARN isoform 1 (3e-105) |
| Best NR hit (blastp) | putative poly(A)-specific ribonuclease (parn) [Heliconius melpomene] (0.0) |
| Best NR hit (blastx) | putative poly(A)-specific ribonuclease (parn) [Heliconius melpomene] (0.0) |
| GeneOntology terms | GO:0005634 nucleus GO:0005730 nucleolus GO:0004527 exonuclease activity GO:0005737 cytoplasm GO:0004535 poly(A)-specific ribonuclease activity GO:0003723 RNA binding GO:0005515 protein binding GO:0046872 metal ion binding GO:0000166 nucleotide binding GO:0006402 mRNA catabolic process GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay GO:0016787 hydrolase activity |
| InterPro families | IPR012337 Ribonuclease H-like IPR012677 Nucleotide-binding, alpha-beta plait IPR006941 Ribonuclease CAF1 IPR014789 Poly(A)-specific ribonuclease, RNA-binding |
| Orthology group | MCL16659 |
Nucleotide sequence:
ATGGAAGTTACACGAAAGAATTTCAAAGAGGTGTTGCCTTTGGTTCGTGATTCAATACAA
GCAGCAGACTTTTTAGCTATAGATACTGAATTCACCGGTCTCATGAGCGGCCGGGATGTG
TCTATGTTTGATTCCCCGCCAGAATATTACGCGACTTTATTGAATGGGACAGCGGATTTT
TTGTTGATTCAATTTGGTTTATGCACTTTTTATTGGGATGAGAAGGAGAAGCAGTATATG
AATGATGCTTACAATTTTTATGTTTTCCCGCGCGGTCGACCTGGTCCCGATAGACTCTTT
ATGTGTCAGAGTTCCAGTTTGGATTTCTTGGCTTCACAGGATTTTGATTTTAATAAGCTC
ATCCGAGAAGGTATATCATACATGACAGAACCGACAGAAGCCAAGCTCAGAGAGGAGCTG
ACTGAGAAGCAAAAGAAGTCGGTTAATGAAAAGGATTGTATTCCGATTCCTGAGGAACAT
AAAGTGCAGATTGACAATATTTGCAAGAAAGTGCGTCATTTCATAGACTTTGAAAATGAA
GATGAGATGGAGATAGATCGTTGTAATGCTTTCATCCGACGACTGCTGTTTCAAGAGCTC
GGCAAGAGATTTCACAATGAAGTGTTTGTTGAAAGTAAGATGCTCGAGAATAAAAACAGG
GTATTGAAAGTTAGCAAGATCAAATGCGGCAGTGACCGCATGAATAGAGACGTGCAGAAG
AAAAATGAGGAATGGGAGCAATTTGAAGATGCTGTCGGATTCTCAAGAGTTGCCAGGATG
ATCAGCCAGTCTGGTAAACTAGTGATCGGACACAACATGTTGCTGGACGTGATGCACACT
CTGAACCACTTCTTCCAGCCTCTGCCCACAGATTATAATACCTTTAAGGAATTCACTCAT
TGCATGTTCCCGAGGATTCTTGACACCAAGTACATGTCAAGCCTGCCACCTATGAGCGAT
AAAGTGGATTCTAGTGTCTTGACTCACTTGCTGGCGACCATGTCCGAGGCTCCGTTTTCG
GTTCCAAAAGCTTTGTGCAAGCCTGGCCGCGGGTACACCCTGGCTGATGACAAGCAGCAC
GAGGCGGGCTACGACGCCTATATAACCGGCGTTTGTTTCCTCGCTATGATCAACCATTTG
GTTCGTATGAGAGGGGATCAGCCGGCCCGCCTCCCCCCCTTGGAGGCCGCCATATGGAAG
CCGTTCATGAACAAGCTGTATCTTGCCAAGACCGCACATCAGGACTCTCCATACATAAAC
CTCACTGGGCCTGATCCTACACCGACTAGAGACCATGTATTTCATGTGACATTTCCGAAG
GAGTGGAAGAGAAGCGACATCAGCCAGCTGTTCAGTCCGTTTGGACAAATAACCGTGCAG
TTTCTGAACGACACAACAGCGTTCATAGCGTTCTCTCGCCGCGACCTCGCCCGCGGCGTC
CCCAGAGCCTTCGCCGGCGACCGCCGTGTTACCATTGTCCCTTATGTCACCTACAAGATC
CCCAAACTGTCTCACTCAAATCAGTACCAGTTGGATCGACGCGAGGATGACAAATATAAG
AAAGTTTACACACATGAAAGTTCAAACGCGACATCACCAGGTTACGCACGAAAAGAGACT
CAGAAGAGTCGAGAGCGATCAAACAGCGTCTCATCTGTACCAGTTGCTAGGAAAAGAACC
TCGTCTGGAATATTCAAGATCGAAGATGTTTGTTCTCCGCCAAAGAAAATAGAAAAGGAA
TTAGCGAATGAAGATAAAAAGGACTTAGACGATGTTAAAAAAATTGAAAACTCGAACAAT
GTGAGCCGCGTCAATGTTAATGTGTTCAAAGAGAGCGACAGCTGGGATTAA
Protein sequence:
MEVTRKNFKEVLPLVRDSIQAADFLAIDTEFTGLMSGRDVSMFDSPPEYYATLLNGTADF
LLIQFGLCTFYWDEKEKQYMNDAYNFYVFPRGRPGPDRLFMCQSSSLDFLASQDFDFNKL
IREGISYMTEPTEAKLREELTEKQKKSVNEKDCIPIPEEHKVQIDNICKKVRHFIDFENE
DEMEIDRCNAFIRRLLFQELGKRFHNEVFVESKMLENKNRVLKVSKIKCGSDRMNRDVQK
KNEEWEQFEDAVGFSRVARMISQSGKLVIGHNMLLDVMHTLNHFFQPLPTDYNTFKEFTH
CMFPRILDTKYMSSLPPMSDKVDSSVLTHLLATMSEAPFSVPKALCKPGRGYTLADDKQH
EAGYDAYITGVCFLAMINHLVRMRGDQPARLPPLEAAIWKPFMNKLYLAKTAHQDSPYIN
LTGPDPTPTRDHVFHVTFPKEWKRSDISQLFSPFGQITVQFLNDTTAFIAFSRRDLARGV
PRAFAGDRRVTIVPYVTYKIPKLSHSNQYQLDRREDDKYKKVYTHESSNATSPGYARKET
QKSRERSNSVSSVPVARKRTSSGIFKIEDVCSPPKKIEKELANEDKKDLDDVKKIENSNN
VSRVNVNVFKESDSWD