New model in OGS2.0 | DPOGS210757  |
---|---|
Genomic Position | scaffold729:+ 22338-27279 |
See gene structure | |
CDS Length | 1002 |
Paired RNAseq reads   | 217 |
Single RNAseq reads   | 529 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | ND |
Best Drosophila hit   | ND |
Best Human hit | ND |
Best NR hit (blastp)   | surface antigen BspA [Capnocytophaga sputigena Capno] (5e-14) |
Best NR hit (blastx)   | predicted protein [Enterococcus faecalis T2] (2e-08) |
GeneOntology terms   | ND |
InterPro families    | IPR000885 Fibrillar collagen, C-terminal IPR008160 Collagen triple helix repeat |
Orthology group | ND |
Nucleotide sequence:
ATGTTGCAGAATAATTTGACATTTCCACTGCTTCCGTCTACGTGGCACAAAATAAAAAGT
AAAGTAGCATGGAACAGTTCTACCAATCCAAGTGATTGTGGAAGTAAGGAAGACAATGCA
ACAAAAGGCCCGGTGCTTACTACAACGGTAGAAAAGGGAGGAAAAGGTGAAAAGGGAGAG
AAAGGTGAAAAGGGAGAGAGGGGAGAAAAAGGTGAAAATGGAGAAAAAGGGGAAAGGGGT
GAGAAAGGATCGCTAGGATCACGTGGGTTAGATGGCGCAAAGGGCGATAAAGGTGTAATG
GGTTCACCCGGCAACATAGGCTTAACTGGTCCAAAGGGAGATAAAGGAGACACAGGAGAG
CAGGGACCAAAGGGAGAAAATGGAAAGGATTGTGAAGGTTTGTCAGCAGCGGAATCGGGG
CTAAATAATGTGGGTTCAAAATCAATGCCGGCATACACCTGTTCATCAATTCCTGATGAT
GGTTCTTTTTACATCAATCCCTCACGAAGTTTCGAAGTTAATTGCGAAGGATACAAAACC
TGTATTAAGCTACCGGATCGTCTTAGGAGCTCCAACTTTAATACCTCAGCATATGAATTT
AAAGATAAAAAAGGTTTTTGGCTAAGTACTTTAGGATTCACCGTGAAAAAACTATATGAT
CAAGATTTTTCAAGGTTGTTATATCTCATGACGAAGTCAGAGGGCTTTCAGCTCACCATG
AAATATCATTGTTTCAACAGTCCAGTTGAGTCATTGAGGATAATGACATGGAATGGAAAC
ATTATAAGTAATATATCCAGCCCCAAAACTCCAATAAAATTTGTTATACCCGAAAAGAGT
AATGGGTGCAAGGACGCTAAGAAGAATGAATTAAAAAGTTCGACTATAGAAATTGAATCT
GACATAACAAGTTACCTTCCTGTTGATTTTTACTTAGGGGACATTATAGGAGATACCATT
CAAAAAGTTTATATCGAGCTGACAAGCCTATGCTTTAAATAA
Protein sequence:
MLQNNLTFPLLPSTWHKIKSKVAWNSSTNPSDCGSKEDNATKGPVLTTTVEKGGKGEKGE
KGEKGERGEKGENGEKGERGEKGSLGSRGLDGAKGDKGVMGSPGNIGLTGPKGDKGDTGE
QGPKGENGKDCEGLSAAESGLNNVGSKSMPAYTCSSIPDDGSFYINPSRSFEVNCEGYKT
CIKLPDRLRSSNFNTSAYEFKDKKGFWLSTLGFTVKKLYDQDFSRLLYLMTKSEGFQLTM
KYHCFNSPVESLRIMTWNGNIISNISSPKTPIKFVIPEKSNGCKDAKKNELKSSTIEIES
DITSYLPVDFYLGDIIGDTIQKVYIELTSLCFK