New model in OGS2.0 | DPOGS202835  |
---|---|
Genomic Position | scaffold892:+ 34766-40917 |
See gene structure | |
CDS Length | 3066 |
Paired RNAseq reads   | 497 |
Single RNAseq reads   | 1472 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA010508 (6e-67) |
Best Drosophila hit   | CG18596 (8e-28) |
Best Human hit | probable methyltransferase TARBP1 (1e-32) |
Best NR hit (blastp)   | novel protein similar to H.sapiens TARBP1, TAR (HIV-1) RNA binding protein 1 (TARBP1) [Danio rerio] (1e-38) |
Best NR hit (blastx)   | PREDICTED: si:dkey-85a20.4 [Danio rerio] (2e-38) |
GeneOntology terms    | GO:0006396 RNA processing GO:0008173 RNA methyltransferase activity GO:0003723 RNA binding |
InterPro families   | IPR001537 tRNA/rRNA methyltransferase, SpoU |
Orthology group | MCL11400 |
Nucleotide sequence:
ATGTATAAAGAAGGAGAGTTATTATCTTTCTTGGATTTGCTAGATTTAGATGAAGAGGTT
ATAGACAGAAGAGCAAAAAGTATCATGCAACGAAGTACTTTAAGCAGTCAGCACTTAGAA
CATTTTATTTACCTTCTGCAATACAAGCATTTGATCAACATCAGAGAGAATAGTGAATGC
GAAAATGAGGAGGAATTCAACTTTCTTAGTAAACTAATTGTCGACGCAGACAATGAGAAT
GCGAACGCAACATGTACACTTGTAAATTTAGTATTAACATTAAATCCTTCCACCATAATA
AATAAATCCGAGCATCTCTTGCAACAAATATTATCAACATTAAATTTCCCTCCTATTAAG
AGGAGCATCATTGAAGATGGTGGTTCAACAAGTAGAGAGACAGAAGACACACTAGTTAAA
CTAAGGATTTGTGGTAGTGTATTAGATGCTGTGAAGAAAGTTGGAGCTAGGCTAGAGCAA
ATTATTTGCACTGAAAATAAACAACTACAAGGATTCTTCCTTATGAACACTGTTCCCAAA
TTTTTTGAGACCGTTGATGATTGTAATATTCTTGATAGAATTTGGAGTTTCGTAAAACAA
CTAAATGATAGTGCAAATGCTTTAAAAGTTTTATGTAGCCTTTCAAACTATTATTTACCA
GTAATTGAAGATGAATCTGAAAATATTTCAATCGAATCTACTATCATAATGGATTCCGAG
TTTTGGAATTTTATTCTGAGTGGATTGCTCTGTGAAGCTCAATGTTTATCTTTAAGAAAG
CAGGCCATATACCTCGCTAAGAGAGCCATAGACTATGCTGCATATAGGAAAAAAGATATT
AAAATCACCTCACACAGCACATTCATATGGTCTAAAGAAAATGAAAAAACATTAAGAAAA
ATGTGGGAAAACTATTTTATATTAATAGATAGTTTACAAGAGAAACAAAGCAATATTGTT
CTACCGTCATTAAAACTTTTTAATAGCATCAACGACATAGGCCACTGTTGGTTGGCGGCC
GCTTTTAATATTGGCCTGAAACATGATAATTTCCAAGTGAGACAAAAATGCTTGATCTAT
AGGTTTCAGTATAGAATAAGTAATCAAATGGAGGCTGTAGGTGTTCTAGAAGCTCTTAAC
GACCCAGCAATATTTGATAATAGAATTAGACATACCTCAGTTATTACACTACTGAAGGAA
GCCCTAACAAATGTTCGAACACTTATAAATTTTCTCCAGGGAATGGCGGATGTCAAGTTG
TCACCAGTGCCACTGTTCTCTTTGACATCCTGCTTAGCTGATCTCCATATATTGCTTAGC
GATTCTGATCAGAAAACTTTATTAAAAACTATACACAAGATATTAAACACTCCATGCAAT
AACACAGTGCTAAGAAAGGCCATATGTGTTAACATGTCACACTTTATTGCAAATTGCTGT
AAGAATTTACATTGGAAGGAGTATTTATTGTTGTATCCATTACTGGCTGTTGAATGCAAC
CAGGAATTTATGAATCCATTTGTTAGTTTCATACAGAATGATATGGATGTACCTGAGGAT
GAGATGGTGCAGTTCATAAATAGTGGAAAGAAATCGCATCTTAATATACAATATGCCCTA
ATTTACTTCCGAGGTCAAGATAAGCCCTTGTTTCTGGAGATGATCGATGATATGATACAT
CAAGTCAAGGACACCAGCAGTAGACAGTATTCAAACAAGATAGCTGAAAACTTACAAGTG
ACAATATTAGAGCGATCAGATTTTTTTGGAATAAATGAAGAATGCGTCCAGTTTAATTGT
CACATACAATATTTGGCAGTTTCAGTACTTGTTAAGATAAGGGACAATGAAATTCTTGAT
ACCGTGGTGAGGTCAGTGAGGAGAAGGATTGATGAATTGCTGAAAAATAAGCTTCGGTAC
CACGAGAATTCCTACCTCGAGAGGTCTATAGAATCTTGTTTACAATGTTTGCTCTTCATA
GCTCTTATGACCGAGGAGGTCGATTTGAAGGACAGTGCTGTGTGGTGTATGGAGTTATTG
GGAAGGATGCCACACCAACCGTATGTCAAGATATGTCTGGAATGGTTTATTTGCTTATAC
TATTATTTTGAGGCGGAGTTCGATCACGTCATGGAGTTTTTAACCTCACACAGCATGGGC
CCGGTCTACGGCGTGCGGCTGAACGCACAGTATCTGGCCACGAAGATTGTTGACATCAAT
GACAAACAGAAATACAAATTGGATGACAAACAATTCACATACATTATAAGGGTTATAAGG
AATTGTCTGCGTCAAGCCCAGGAGTTGGAAGAGAAGAGTCTCATGAAGTTATCGAACAGC
TGTTTCATCAATTCGTTTGACATCGTCCAAAGCTTGAACTTCTTCGACGTGTTCTATAAA
CTGCCCCTGTCGTTAACACACACCGCCAGACATTTCGATATGACCAATAAATTTCTTCAA
ACTGTGACCATGGACATTGAAGCGTGTTTGGAAACAGGTTTGAGGGGTGAACTCCTGAGT
GGTCGATTCGTCGTTCCAGAGAAGATCCGATGTGAGTTTTTAACAGATGTCATTGATGAC
GAGGAACCTGAGATTATACAAAAAAAATACGTCCCCTGGAACGCATCAACAGCCCTCGTA
GTTGTAACAGCACCCGACGATGAAACGGGGGAGGTGTTCGGAGTACACACGTACGTCATG
GACAGCCTGAGACATCTACAGAACAGAATGTTCCAGGACCTGAGCGTGTCAGCTGAGCGG
TGGCTGAACGTGGAAGAGGTCCGCCCGGGAGAGCCTCTCAAGCGATATCTCATGACGAAG
AAGGCCGAGGGACACATCGTCGTAGCTGCGGAACAGACTTCTAATAGCGTCAAACTGCAA
CATTTCAAATTCCCCAAGAAAACCATCTTGATGCTGGGACACGAGAAGGAGGGCGTCTCG
TGTGAGCTGCTGCCTCTGTGCGACGCGTGCGTGGAGGTCCCTCAGCGAGGAGTGGTCCGC
TCTCTCAACGTGCACGTCACCGCCGCCCTCTTCGTGTGGGAGTACACGCGCCAGCACCTC
CTCTAG
Protein sequence:
MYKEGELLSFLDLLDLDEEVIDRRAKSIMQRSTLSSQHLEHFIYLLQYKHLINIRENSEC
ENEEEFNFLSKLIVDADNENANATCTLVNLVLTLNPSTIINKSEHLLQQILSTLNFPPIK
RSIIEDGGSTSRETEDTLVKLRICGSVLDAVKKVGARLEQIICTENKQLQGFFLMNTVPK
FFETVDDCNILDRIWSFVKQLNDSANALKVLCSLSNYYLPVIEDESENISIESTIIMDSE
FWNFILSGLLCEAQCLSLRKQAIYLAKRAIDYAAYRKKDIKITSHSTFIWSKENEKTLRK
MWENYFILIDSLQEKQSNIVLPSLKLFNSINDIGHCWLAAAFNIGLKHDNFQVRQKCLIY
RFQYRISNQMEAVGVLEALNDPAIFDNRIRHTSVITLLKEALTNVRTLINFLQGMADVKL
SPVPLFSLTSCLADLHILLSDSDQKTLLKTIHKILNTPCNNTVLRKAICVNMSHFIANCC
KNLHWKEYLLLYPLLAVECNQEFMNPFVSFIQNDMDVPEDEMVQFINSGKKSHLNIQYAL
IYFRGQDKPLFLEMIDDMIHQVKDTSSRQYSNKIAENLQVTILERSDFFGINEECVQFNC
HIQYLAVSVLVKIRDNEILDTVVRSVRRRIDELLKNKLRYHENSYLERSIESCLQCLLFI
ALMTEEVDLKDSAVWCMELLGRMPHQPYVKICLEWFICLYYYFEAEFDHVMEFLTSHSMG
PVYGVRLNAQYLATKIVDINDKQKYKLDDKQFTYIIRVIRNCLRQAQELEEKSLMKLSNS
CFINSFDIVQSLNFFDVFYKLPLSLTHTARHFDMTNKFLQTVTMDIEACLETGLRGELLS
GRFVVPEKIRCEFLTDVIDDEEPEIIQKKYVPWNASTALVVVTAPDDETGEVFGVHTYVM
DSLRHLQNRMFQDLSVSAERWLNVEEVRPGEPLKRYLMTKKAEGHIVVAAEQTSNSVKLQ
HFKFPKKTILMLGHEKEGVSCELLPLCDACVEVPQRGVVRSLNVHVTAALFVWEYTRQHL
L