New model in OGS2.0 | DPOGS213850  |
---|---|
Genomic Position | scaffold4404:+ 4506-5726 |
See gene structure | |
CDS Length | 1221 |
Paired RNAseq reads   | 6 |
Single RNAseq reads   | 19 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA001404 (4e-07) |
Best Drosophila hit   | ND |
Best Human hit | ND |
Best NR hit (blastp)   | PREDICTED: similar to polyprotein [Acyrthosiphon pisum] (6e-57) |
Best NR hit (blastx)   | PREDICTED: similar to polyprotein [Acyrthosiphon pisum] (3e-66) |
GeneOntology terms    | GO:0006278 RNA-dependent DNA replication GO:0003964 RNA-directed DNA polymerase activity GO:0003723 RNA binding |
InterPro families   | IPR000477 Reverse transcriptase |
Orthology group | MCL10070 |
Nucleotide sequence:
ATGGGAGCTCGGCCGAGTCATTATGCTACCGAAGCCTGGAAAGAACATCTCACTGCCAGG
GAGCTACCGCCCCATCAGACTGCTGTCAACCGTCTCGAAGGTTTTCGAGAAACTTCTACT
GCTGCACCTCATACCACACATCCAACCACGCGACGAACAGTTTGGCTTCAGAGCGGAGCA
CTCAACCACGCTCCAGCTCGCGAGGGTCCTGCACGTCCTCTCGGTGGCTCTCAACAAGAA
CGAGTCAGCCGTCGCAGTGACGCTCGACATGGAGAAAGCTGGCACCCCGTCCTATTGTAC
AAGCTGGCCACATCCACTACTCCTCGCCGAATAGTCAGGATTGTGGTCACCTTCCTGCAA
GACGGGCGTTTCCAGGTGTCGGTGGAAGGCACCCTATCAACGCAACACCCCATCAGAGCC
GGAGTGTCGCAGGGGAGCTGCCTGTCTCCGATATGTTACTCCAAGTATACGGACGACATC
CCAGTGGCGGAAGGTGCGACCTTAGCGCTCTACGCCGATGACGCTGCCTACATTACAACA
TCTCTGACTCCCGCCCGCGCGGCGATAAAAATGCAGCGTCAACTGGACCAGCTCCCTCAA
TGGCTGGATAAATGGCGTCTCAAAGTGAACGTCTCCAAGACCCAGGCGATTTCCTTATGG
CGGCGACACCTACCGCAGCCCCCTAACTTGATGGGACAGCCTCTTACATGGGCACGGTCG
ATCAAGTACCTTGGCGTGACCATCGACCCCTACCTGTCAATGAAGTACCACGTGAAGGAA
GTCGTGGTTAAAACGCGAGCCGCGCGTGGCTTCCTGCGACCCGTTCTCCGATCGGATCTC
CTCCTCAAAGCCAAGCTGGCCGTCTACAAGACATACATTAGATCGCGCCTAACATACGCC
GCTCCCGCCTGGTGTGCCTTAGTCAAGAAACCCGAGCGTGGACGAATGCGTGCCCAGCAG
TCACTAGCGCTAAGGACTTTTGTAGACGCGTCACGGTTCATACGGAACGCGACCATCACC
AGAGACCTACGCATGAAGAGCGTAGACGTCTTCATAACTCGCCTGAGTCGGGCCATGTTC
CAGCGCGCTGACGCGTCGGCCTTCGCACACATCCGTGAAGTGGCCCCGTACCATAGACGC
CCGCCAGATGGATACGCCCTGCCGCGAGATCTTCTTCCCGTGGCCCTACCTGGACTTACC
CCACCCGAACACCCGCCTTAA
Protein sequence:
MGARPSHYATEAWKEHLTARELPPHQTAVNRLEGFRETSTAAPHTTHPTTRRTVWLQSGA
LNHAPAREGPARPLGGSQQERVSRRSDARHGESWHPVLLYKLATSTTPRRIVRIVVTFLQ
DGRFQVSVEGTLSTQHPIRAGVSQGSCLSPICYSKYTDDIPVAEGATLALYADDAAYITT
SLTPARAAIKMQRQLDQLPQWLDKWRLKVNVSKTQAISLWRRHLPQPPNLMGQPLTWARS
IKYLGVTIDPYLSMKYHVKEVVVKTRAARGFLRPVLRSDLLLKAKLAVYKTYIRSRLTYA
APAWCALVKKPERGRMRAQQSLALRTFVDASRFIRNATITRDLRMKSVDVFITRLSRAMF
QRADASAFAHIREVAPYHRRPPDGYALPRDLLPVALPGLTPPEHPP