| New model in OGS2.0 | DPOGS202937 |
|---|---|
| Genomic Position | scaffold301:+ 5427-12996 |
| See gene structure | |
| CDS Length | 1773 |
| Paired RNAseq reads | 730 |
| Single RNAseq reads | 1625 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA001906 (1e-121) |
| Best Drosophila hit | CG6232, isoform B (3e-44) |
| Best Human hit | thrombospondin type-1 domain-containing protein 4 precursor (9e-47) |
| Best NR hit (blastp) | PREDICTED: similar to thrombospondin repeat protein 1 [Apis mellifera] (3e-59) |
| Best NR hit (blastx) | PREDICTED: similar to thrombospondin repeat protein 1 [Apis mellifera] (5e-66) |
| GeneOntology terms | GO:0004222 metalloendopeptidase activity GO:0005576 extracellular region GO:0005578 proteinaceous extracellular matrix GO:0008233 peptidase activity |
| InterPro families | IPR000884 Thrombospondin, type 1 repeat IPR010909 PLAC IPR010294 ADAM-TS Spacer 1 |
| Orthology group | MCL39227 |
Nucleotide sequence:
ATGGCGCCTCTATCGAGATTATTCATCATTTTAGTGATTACCGTGGTAGGTGGTGAGGTA
CTGTCGGTGGTAGGTAGTCGCGATGTTCGCTGCGGGCGGCGGCTGGTATCCGGTCTGTTC
GCACGGCCACGTCTACCACTCGGCTACTCCTATGTTACCACCGTCCCCTCTGGCGCCTGT
CGACTCAACGTCTCGGAGATACTCGCCAGCGATAATTACATCGCTTTGAAAATAACGAAT
GGTTCGTTTATAATGAACGGTGAATTCGCCGTCAGTAGTCCTGGTACATACGAGGCAGCT
GGTGCAAGATTCGTTTACAGCAGAAAAACAGGTCTAGATTCAGTGTATGCACTTGGACCT
ACCCACGATTCTATCGATATTATGATATTATACACTCAACCAAATCCAAGTATAAAATAC
GAATATTTCACCGAATCGTTGCCAGGTGAAGTTGAAACTGAATCATTGACAGTGTCCCCA
CCAGAACCAACTGTCGTACCCAAACATTCGAGACGTCATCACGGTATAGAATACGCTAAA
GCAGGAGCCCGGCATTTGGATCCAGGAGTCAAAGATAAAAACAACGTTGAGGAAAATGTC
GTAGCTGGAAGAAAATTTGTATGGAAGATACTTGCGTATACTCAGTGTTCTAGAAGCTGC
GGTGGTGGTATTCAGCTAGGAAAATACAGGTGCGTAGAAGTATCCTCTAGTGATTGGGAG
GTGTCCCCAGCACATTGTTTGGGTTCCCCTCCGTCAGGTAGACGTCGTCGTTGTGGAACC
ATTCCTTGCGCTCCGAGATGGCGGGCCGCTAGCTGGTCTCCATGCCCGTCCTGTGGACCA
GCGACAAAGAATAGGATCGTTGGATGTGTACAAGATCATTCAAGAGGAATTACTAAGGTA
AGCGATCAAAAATGTTTGGCTTCAAAACCGGCGACCACAGAAGATTGTAACATCCCAGAT
TGTAAAAACCCTGGAATACGGCACACAGAGGCGAAGCCCCAGGAACATACAGATGCCTTC
CACGATGGTTCAGTGTACACAGTCGATGTTAATACCACGGACACGGAACTTGGACCAGAA
TATAGTTTCACTTCCATTAGAGGATGGCTTTTCACCGATTGGTCTGAGTGTGTAGGATGG
TGTGTAGGCGGTGGTTTGAAGACCAGGTCTGTTCGATGTGGTGATCCCTCAGGTTGTGCA
GGACCCTCCCCGGAGACGTCTCAAGACTGTGTCCCTTCAGTGACATGTGAACCCCACGAT
GGCCGCTGGTTTGCAGGGGACTGGTCGAAGTGCTCGTCCCCTTGCGGGAAGCAGATCCGA
GTGGTGTTATGTATCGGAGGTACCGGAAGGCATCTGAGGGACTCCGCCTGTAGGGACCCT
CGGCCAGAACACGAGAGGAACTGCCCCGGAGAATGCCCAGCGACGTGGTATTACAGCGAA
TGGGGTCAGTGTACAGGTAACTGTAGTATTGGCCTGGGCGTCCAACGCCGATGGGTGTCG
TGTGTGAGGAATGATGTCACCGTCAGCGAAACTGAGTGTACGACACCACCACCGACACCA
CACAGATCCTGTATCCCGTCATGTATACCACCAGATCTCGTTATAGAGTCTCAAAAATCA
ACGAACGATCAATCGACAATGAAGCCGAGACCACAAACAGTTCCATCGGGGAAAGACTGC
GAGGACAAATTGACGAACTGCGCTCTAGCCGTACAGGCGCGACTGTGCCATTACAAATAC
TACATCCACAACTGCTGCGATTCTTGTAAATAA
Protein sequence:
MAPLSRLFIILVITVVGGEVLSVVGSRDVRCGRRLVSGLFARPRLPLGYSYVTTVPSGAC
RLNVSEILASDNYIALKITNGSFIMNGEFAVSSPGTYEAAGARFVYSRKTGLDSVYALGP
THDSIDIMILYTQPNPSIKYEYFTESLPGEVETESLTVSPPEPTVVPKHSRRHHGIEYAK
AGARHLDPGVKDKNNVEENVVAGRKFVWKILAYTQCSRSCGGGIQLGKYRCVEVSSSDWE
VSPAHCLGSPPSGRRRRCGTIPCAPRWRAASWSPCPSCGPATKNRIVGCVQDHSRGITKV
SDQKCLASKPATTEDCNIPDCKNPGIRHTEAKPQEHTDAFHDGSVYTVDVNTTDTELGPE
YSFTSIRGWLFTDWSECVGWCVGGGLKTRSVRCGDPSGCAGPSPETSQDCVPSVTCEPHD
GRWFAGDWSKCSSPCGKQIRVVLCIGGTGRHLRDSACRDPRPEHERNCPGECPATWYYSE
WGQCTGNCSIGLGVQRRWVSCVRNDVTVSETECTTPPPTPHRSCIPSCIPPDLVIESQKS
TNDQSTMKPRPQTVPSGKDCEDKLTNCALAVQARLCHYKYYIHNCCDSCK