| New model in OGS2.0 | DPOGS215010 |
|---|---|
| Genomic Position | scaffold361:+ 85836-90535 |
| See gene structure | |
| CDS Length | 1599 |
| Paired RNAseq reads | 1171 |
| Single RNAseq reads | 2664 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA012191 (9e-173) |
| Best Drosophila hit | CG6322 (9e-130) |
| Best Human hit | U4/U6 small nuclear ribonucleoprotein Prp4 (6e-131) |
| Best NR hit (blastp) | PREDICTED: similar to wd-repeat protein [Tribolium castaneum] (3e-179) |
| Best NR hit (blastx) | PREDICTED: similar to CG6322-PA [Apis mellifera] (5e-161) |
| GeneOntology terms | GO:0008380 RNA splicing |
| InterPro families | IPR019781 WD40 repeat, subgroup IPR014906 Pre-mRNA processing factor 4 (PRP4)-like IPR003648 Splicing factor motif IPR001680 WD40 repeat IPR015943 WD40/YVTN repeat-like-containing domain IPR011046 WD40 repeat-like-containing domain IPR019775 WD40 repeat, conserved site IPR019782 WD40 repeat 2 IPR017986 WD40-repeat-containing domain |
| Orthology group | MCL13600 |
Nucleotide sequence:
ATGTCTGACGATGAAGTAGTGGCGGTGAAAAAGCCAAAACTGTATTATGGGTCTCTGGAG
GAGCAGGAGAAGGCTCGTCTGGCAGCTCTGGCGGCTGCTGCCAGGGAGGGAGTCAAAGAA
AGTGCCAAAGAAACTGGTGACATACAAATTTCCAATGAATACATGGAGCTAGAAGATGAG
ATAACAAAAGACAAAAAGGCATTGCTAGAGGAGTTTGAACGGAGGAGAAAAGCTCGTCAG
TTGAATGTATCAACGGACGATGACGAGGTTAGACGGAGTCTCCGGCAGCTCGGTGAGCCT
GTGTGTCTGTTCGGGGAAGGCCCAGCCGAGAGGAGGGTCCGGTTAAGGGACTTGCTCAGC
TATCTAGGTGAGGATGCCATCCACAAGGCCCTGGAAGAGGAGGAGGCCCGCCTGGAGAGG
GACCGGGGCCGGGAGGGGACCTGGTACCACGAAGGCCCCGCGGCGCTGAGGAGGGCGAGG
ATCGATATAGCCAGGTTCTCACTGCCGAGGGCCAAGCAAAGACTGGCCCAAGCTCGCTCA
GAGTTGGAACTGGCCGGCAGCGTGCGAGCGGCCGCCAAGCAGGACGCTCAGAGGAAGGCC
GCGGCTAACTCCATATATTGCAGTCAGATCGGTGACACGAGGCCTATAAGCTTCTGCAGG
TTCAGTTCGGACAGTAAAATGCTCATAACATCGAGCTGGTCGGGCGTGTGCCGCGTGTGG
TCGGTCCCTGGGTGTGTGGAGGTCCAGACGTTGTTGGGACACACGGGGAACGTCAGCTCT
GCGACCTTCCACCCGAAGGCGATGATGCCGCATCATCTGCAGCTCAAGGCGGAAAAGGGG
GAGAAGTCTGAGGATAAATCCGAGGATATGTCCGTGGATGTGTCGGACGCGTCGCATAAC
GTCGCGATGGCTTCCAGCGGATATGACGGCAGCGTGTTCCTGTGGAACTTTGTCAGCGAG
TCTCCGCTGGCGTCCTTGCCCGGCCACGGCCCGGCCCGCGTGTCCAGGGTGGAGTTCCAT
CCGTCAGGTCGCTACCTGGCCGCCACGGTCTTCGATCACTCGTGGAGGCTGTGGGATCTG
GAAACACAGACCGAGGTCCTTCACCAGGAAGGTCACGCCAAGCCGGTGTACAGCGTAGCC
TTCCAGTGCGACGGGTCCCTGGCGGTGACCGGTGGAATGGACTCTTTCGGGCGCGTTTGG
GACCTTAGGACGGGTCGCTGTGTGATGTTCCTCGAGGGTCACCTCGGCCCCGTGCTGGGG
GTGGACTGGGCCCCCGCGGGTCACCAGCTCGCCACGGCCGCCGCCGATCACCAGGCGAAG
ATCTGGGACCTGAGGCGCCGGTCGTCCATATACACCATCCCTGCGCACACGCACCTCATC
AGCGACATTCGTTATCAACGCACCCAGGGTCACTTCCTGTTGACCTCGTCCTATGACCAC
TCCGCCAAGCTGTGGTCCAACCCCGCCTGGCACCCGCTGAGGACACTCTCCGGACACGAC
AACAAGGTGATGAGCTGTGATATTTCACCCGACAATAAGTACATAGCGACCAGCTCCTAC
GACAGAACATTCAAGCTCTGGGCTCCGGACATGGCTTAA
Protein sequence:
MSDDEVVAVKKPKLYYGSLEEQEKARLAALAAAAREGVKESAKETGDIQISNEYMELEDE
ITKDKKALLEEFERRRKARQLNVSTDDDEVRRSLRQLGEPVCLFGEGPAERRVRLRDLLS
YLGEDAIHKALEEEEARLERDRGREGTWYHEGPAALRRARIDIARFSLPRAKQRLAQARS
ELELAGSVRAAAKQDAQRKAAANSIYCSQIGDTRPISFCRFSSDSKMLITSSWSGVCRVW
SVPGCVEVQTLLGHTGNVSSATFHPKAMMPHHLQLKAEKGEKSEDKSEDMSVDVSDASHN
VAMASSGYDGSVFLWNFVSESPLASLPGHGPARVSRVEFHPSGRYLAATVFDHSWRLWDL
ETQTEVLHQEGHAKPVYSVAFQCDGSLAVTGGMDSFGRVWDLRTGRCVMFLEGHLGPVLG
VDWAPAGHQLATAAADHQAKIWDLRRRSSIYTIPAHTHLISDIRYQRTQGHFLLTSSYDH
SAKLWSNPAWHPLRTLSGHDNKVMSCDISPDNKYIATSSYDRTFKLWAPDMA