New model in OGS2.0 | DPOGS213096  |
---|---|
Genomic Position | scaffold1564:- 7818-14924 |
See gene structure | |
CDS Length | 1698 |
Paired RNAseq reads   | 784 |
Single RNAseq reads   | 2090 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | ND |
Best Drosophila hit   | CG8831 (1e-71) |
Best Human hit | nucleoporin p54 (2e-60) |
Best NR hit (blastp)   | nuclear pore complex p54 component scnup57 [Glossina morsitans morsitans] (2e-114) |
Best NR hit (blastx)   | PREDICTED: similar to CG8831-PA [Apis mellifera] (6e-81) |
GeneOntology terms    | GO:0005643 nuclear pore GO:0006913 nucleocytoplasmic transport GO:0006605 protein targeting GO:0005487 nucleocytoplasmic transporter activity GO:0006607 NLS-bearing substrate import into nucleus |
InterPro families   | ND |
Orthology group | MCL15628 |
Nucleotide sequence:
ATGGCATTTTCTTTCGGTTCTAATACAACCTCACAGAGTACAGGTTTCGGTTCTGCCGCT
AAACCGACATTTTCATTTGGTAGCACTAACACAGCTACTACAAGTACTGCTGGTTTCGGG
GGTTTTGGTACAGCTACGTCTGCTTCTGGTTTTGGCACATTTGGTGCACAGACATCTACT
ACAGCGACTCCTTTTGGTGGTATAGGCACAGCTACAACAACTACACCATCACTTTTCAGT
GGCACTGGCTTTGGAGCTTCTGCAGCTAAACCAGCAACCGGATTCGGTGGTGGTTTCGGG
ACATCAACATTTGGTACTGGAACTGGATTTGGTACTGGAACATCAACATTTGGAAACACA
GCGCCATCATTTGGCACAAACACATTAGGAAGCAATGCCTTTGGGACAGGATCAACATTT
GGCACATCCTTTGGCTCAAAACCTAGTACTGGTTTTGGTGGATTTGGTACTCTTGGCACC
AATACATTTGGACAGCAACAGCAGCAACAACAGCAGCAACAGCAACAACAGGGACCAACG
AATGCCAATGAAGCTCTCGTGGCAGCTGTCTTCAACTGTTGTGTGTTTGGTGATGAACGC
GATCAAGTCCTGGCTAAGTGGAACCTCTTACAAGCACAGTGGGGCACAGGTCAAGCCTAC
TACAGTCGTAATGCACCGCCACTTGAACTGAACGAACAGAATCCTCTTTGCCGTTTCAAA
GCTGTTGGTTATTCTAGAATCGGTGGCAAGGAGGATAAGGAAGGTCATGTCGCGTTACTG
TTCAATAAAACTGAACAGGAAATTAAGAATAATCAACAAACTCTATCTACATCACTGGCT
GGTTTGCTCGGTAATAAGCCAAATTTAGCCATCAATATTGAATCTACAAAGGCTGTATCA
GATACTAAAACCCAGGTGATTATATATGTGGTTGACAAGGGGGCGAATGGAGTCCATATC
AGCGCAACGGAGTTGTCGACATTTCTTAACACTGGCGCTGCTAAGAATGCTCTCAATACA
GCTGGATGTTCCAGCATAACACCCGTCACGAGACCAACTCCGCAGATGTTAGATCAGTAT
CTACAAACACCTCCACCAGGAATGGACATGCGTCTTTGGAAGCAAGCCCAAGCAGACAAT
CCTGATCCGGAAAACTACATACCTGTTCCTATCATTGGTTTCTCTGAGATAAAGTTCAGA
TCCCGTGCTCAGGGTGAGGAGGCTGCTTTACAGGCTCGTTGGTTGAAGCGTGCTGGAGAC
ACACTGGGAGAATTACGGACACGACGAGCTGCAGCAGCGGCAGCCCTAGCACGCTCTGCG
GCAACCCTACACTCACTAAAACATACATTGCTGCAGGTGATCGCTCGCCAGGAGGTCGCA
GGTCGTGTGGGGATACCCCTGAGTCCTGAGGAGGAGGCGGCTCGGGCTCGTCTACAAGAA
TTAGCATCACAACTGGCTGCGCCACCACTCTATAATGGTCGTTTGAACGAACTCCTCTGT
GCCGTTCGTCTTCAGCGCAGCGCAAGCGCAGGCGCCCCTCTCGAGAGATATCAATTGGAT
CCAGGTGCTCAAGAGGACGTGAAGCAATTCCTATCTCTCCAGCAGAAGGGTATGGCACAT
CTATTGGACACAGCTCGTAAGGACCTTTCAGCTCTCAACACCATCGCTGAAGGGATGGCG
CGACTCGTGCGAGCTTAG
Protein sequence:
MAFSFGSNTTSQSTGFGSAAKPTFSFGSTNTATTSTAGFGGFGTATSASGFGTFGAQTST
TATPFGGIGTATTTTPSLFSGTGFGASAAKPATGFGGGFGTSTFGTGTGFGTGTSTFGNT
APSFGTNTLGSNAFGTGSTFGTSFGSKPSTGFGGFGTLGTNTFGQQQQQQQQQQQQQGPT
NANEALVAAVFNCCVFGDERDQVLAKWNLLQAQWGTGQAYYSRNAPPLELNEQNPLCRFK
AVGYSRIGGKEDKEGHVALLFNKTEQEIKNNQQTLSTSLAGLLGNKPNLAINIESTKAVS
DTKTQVIIYVVDKGANGVHISATELSTFLNTGAAKNALNTAGCSSITPVTRPTPQMLDQY
LQTPPPGMDMRLWKQAQADNPDPENYIPVPIIGFSEIKFRSRAQGEEAALQARWLKRAGD
TLGELRTRRAAAAAALARSAATLHSLKHTLLQVIARQEVAGRVGIPLSPEEEAARARLQE
LASQLAAPPLYNGRLNELLCAVRLQRSASAGAPLERYQLDPGAQEDVKQFLSLQQKGMAH
LLDTARKDLSALNTIAEGMARLVRA