New model in OGS2.0 | DPOGS215769  |
---|---|
Genomic Position | scaffold75:- 184097-193517 |
See gene structure | |
CDS Length | 2955 |
Paired RNAseq reads   | 1351 |
Single RNAseq reads   | 3301 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA003646 (0.0) |
Best Drosophila hit   | CG6739 (1e-33) |
Best Human hit | sortilin-related receptor preproprotein (9e-12) |
Best NR hit (blastp)   | hypothetical protein AaeL_AAEL008735 [Aedes aegypti] (3e-37) |
Best NR hit (blastx)   | conserved hypothetical protein [Culex quinquefasciatus] (1e-41) |
GeneOntology terms    | GO:0005041 low-density lipoprotein receptor activity GO:0005509 calcium ion binding GO:0016020 membrane |
InterPro families    | IPR002172 Low-density lipoprotein (LDL) receptor class A repeat IPR020067 Frizzled domain IPR023415 Low-density lipoprotein (LDL) receptor class A, conserved site |
Orthology group | MCL18819 |
Nucleotide sequence:
ATGGTTAACGGCAATTACGTCCTGTACGGAGACAGACCGGCATCGGAGTCGCAAATTGTG
AGCGATCATGTTCAAACAAGGACTGCCGAGAGGAAACCGAAACGAAAGTCCAACAGAACA
GCCAACGAAGTCCAGCATACTCTGAACCTCGACGAGCTGGATAATCAGACTGACACGGTT
AAATACGAGAACAAAATCAAAGAACCCAAGCTGTTGAGGTATGTCCCAACGACTGAGGTG
GAGGAGAACTTTGTGACCGAGAGATTCGAGACTTTAGACGCTAAGATGAACGATGAGCCG
CCGAGAAGGAATTTTACGAAGAAGCCCAAAAACCCATCTGATGGGTCTGTTAACTACGCC
TACTCCAGATCTAGCAGCAGTTGCAGCTCCCCGAACGGTAATCTGCCGACGATATCTGAA
CACGTCGAACAGTACGGAACCTACAGAGTCTGCTCTCCACATTCACCACCGAGGAGTATG
AGCAATATAAATTGCTATGAGTCGAAACTAGATAAATATTTCTCGAAACCGAGAGATTTG
AAGACCTTCACTGCAAAGGGCTCTCATCCCGACAGTTTGTACCGCGTGTCTTCAGACGAA
GCCGCCGGCTCAGACAGGTTGATGCGCGCCCTACGTCTGCTCCGCTGGCCTCTTGCACTG
TTTACCGTCTGCGTAGCCTTAGCAGCCTTTGTATACTTTTTGATGCCAGTTAATATGGAT
TCCGAAATAGACGCCGTGAACGGAACTTTTTGGGAAGAGAGTGTATCGGAGGCTCAATCG
CATAGTGCTCCAAAAATATCGAAAAATCTGAACGAAGAAAGGAAAACGCGACCGCTAGGT
AAGACACCGGAAATCGACTTTTATGACGCTGATAACGGTAACGTAAATGATTTAGGATCA
ATAGTTGATACGATGGCAAGCCCGAACAGAAAGTTGCCCGCACCACCAGTGTTCCCCAGT
CACGTTTCGCTTGAAGTTCAATATGGAAACGAAAAAGCGGATTCGGATAAGGCGCGTATG
TCTAAGGTTCTTAAAGAACCGGAGGACGAATCGACATTAAAACCGCATATAACTCAGAAA
CCAGAAAAACCATTGGCAATTTACTTCAAAGATGCTAACAGTATCACGACGTCAACGGAC
GCTGGACTCATTGCAGAGACATTCACGGATGCGGAATCCTCAAACGATATTGCTATATTT
TTGAAGAAACAACCAAATAAATTAGCGGATCAAAACAAACTTCATCAAACAAATCCGTCT
TTGTTCAATAAAAACGACATCAAGACGCGCTTCGTCGCTCCCGAAGTCTCAGAGTACTAC
GCGCGTCCCGCTGCCAACAGTGAAGTGAAATTCACATCAGGTCATTCTAAGTTTTTTGGT
ATTTCGATAGAGGATGCCCAAAATATGAAATCAACAACTCAAAACTCACTCTATAACACC
AGAGTATCGCCCACTCTGCCGACTTGGAAAGACAGAGGTGACGCTACAACTAAAAAATAT
CCCATCAACTACGACGCTCCCCAATGTCGTTCTACTCGTCTGTCTCTCTGTCGCGGTGTT
CTTCCATACGACCTGGCCAGTGCCCCGGCCTCCATCGCCATGACGGACGTCACCACTCTC
CTGCCACAGATAGAGTACCTCGTCAGCACCAACTGCAGTGAACGTGTCAGACACTTCGCT
TGTTCTCTGCTCGAACCCGAGTGCAGCCCTCCGCCATACTCACCGAAACTACCCTGCTAT
AATTTCTGCAAGGCAATCGTGGACAGTTGCGAGGGCAACATACCAAGCGAGTTGCAACCA
ATGTTCTCGTGCAACCAGTACTCCACTGGGAACTGCGCCCCGGCTCGTGGTCCCTGTTAT
CAGCGGGAGTTGGCTTGTGGGGACGGGACCTGTGTTCCCAGGGACTGGGTGTGTGATGGA
ACCAGAGACTGTCCTGCCGGAGAGGACGAGGCGCCGTGTTCCGCCTGCGACGACAACGAG
TACCGCTGCAGTTCAGGGATGTGCATCACCAAACGTTGGCTGTGCGACGGATACGCGGAC
TGCGCCAGTGGGGAGGACGAGAGAGATGAGCTGTGTAGAGGAAGATTGAGGAACGGTTTA
TTGAGGGACAGGAATCAGAAGCTGGCGGGGAGATACGACGGAGGAGGGGCAGAAGACACA
CACGAGCCAGGGGAGGAACTGGCTGGATCCGCGCCAGCGCCATCTGTCAGGAAACCAAAT
AGATTACCTGTTGATGGAAGGAATGGGGAAAATGAAAGCAGCAAGGAATTGCTCATGACG
AGTGACAGCAACAGCGGCTTCAGAAGGAACTTCACACGAAGACCATCTCCGTCGCGGCTC
ACGCCGTACAAACGACTACAGGCCATGACACCACTACAGGACAAGACGTCCTCCGAAGAG
GAGAAGGAATTACTGTTCATGGAGACATCACTCAGAAACAAAACAAACAAAACAAACAAG
ACAAATACAACCAAAGAACCAGACAACAAGAAGGATTCGGCGGAAGATTTGACTCTAGAT
GATTTGGGCTTGTTCGACATCGAGAAGAACAAGCCGGTGGAAGTCAATATGGACAATAAG
ACAGAGACACACGCGCAGAGAGCGAACGCACAAGAAGCGGCTGTTCATAAACAAGACTCG
GTGGAGGAACCCACGCACACGTCCGTAGCAGTGAGGGTCAACCAAACGATGAAGAAATTA
GACCGCGTCATAGACGGCGCGTCCATGTTAAGGAAAGCAGCAAAAGAACGTCAAGCTGAC
ATCATGGAGTCGATCGAATCCAACGGAACAGCGGTGGACAACTCAGAAGACATGGCATAC
AACAGCGCCCACGCCTCCCCCTGTCCCAGCAGCGAGCTGCGGTGTGTGGACGGCAGGTGC
ATCACACTCTCCCAGCTCTGCGACGGCACCATCGACTGCTCCGACCACGCGGACGAGGAC
AACTGCTACACGTGA
Protein sequence:
MVNGNYVLYGDRPASESQIVSDHVQTRTAERKPKRKSNRTANEVQHTLNLDELDNQTDTV
KYENKIKEPKLLRYVPTTEVEENFVTERFETLDAKMNDEPPRRNFTKKPKNPSDGSVNYA
YSRSSSSCSSPNGNLPTISEHVEQYGTYRVCSPHSPPRSMSNINCYESKLDKYFSKPRDL
KTFTAKGSHPDSLYRVSSDEAAGSDRLMRALRLLRWPLALFTVCVALAAFVYFLMPVNMD
SEIDAVNGTFWEESVSEAQSHSAPKISKNLNEERKTRPLGKTPEIDFYDADNGNVNDLGS
IVDTMASPNRKLPAPPVFPSHVSLEVQYGNEKADSDKARMSKVLKEPEDESTLKPHITQK
PEKPLAIYFKDANSITTSTDAGLIAETFTDAESSNDIAIFLKKQPNKLADQNKLHQTNPS
LFNKNDIKTRFVAPEVSEYYARPAANSEVKFTSGHSKFFGISIEDAQNMKSTTQNSLYNT
RVSPTLPTWKDRGDATTKKYPINYDAPQCRSTRLSLCRGVLPYDLASAPASIAMTDVTTL
LPQIEYLVSTNCSERVRHFACSLLEPECSPPPYSPKLPCYNFCKAIVDSCEGNIPSELQP
MFSCNQYSTGNCAPARGPCYQRELACGDGTCVPRDWVCDGTRDCPAGEDEAPCSACDDNE
YRCSSGMCITKRWLCDGYADCASGEDERDELCRGRLRNGLLRDRNQKLAGRYDGGGAEDT
HEPGEELAGSAPAPSVRKPNRLPVDGRNGENESSKELLMTSDSNSGFRRNFTRRPSPSRL
TPYKRLQAMTPLQDKTSSEEEKELLFMETSLRNKTNKTNKTNTTKEPDNKKDSAEDLTLD
DLGLFDIEKNKPVEVNMDNKTETHAQRANAQEAAVHKQDSVEEPTHTSVAVRVNQTMKKL
DRVIDGASMLRKAAKERQADIMESIESNGTAVDNSEDMAYNSAHASPCPSSELRCVDGRC
ITLSQLCDGTIDCSDHADEDNCYT