New model in OGS2.0 | DPOGS205652  |
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Genomic Position | scaffold67:- 74350-74922 |
See gene structure | |
CDS Length | 573 |
Paired RNAseq reads   | 14 |
Single RNAseq reads   | 40 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA001001 (1e-73) |
Best Drosophila hit   | lethal of scute (7e-18) |
Best Human hit | achaete-scute homolog 1 (1e-11) |
Best NR hit (blastp)   | achaete-scute-like protein [Bombyx mori] (3e-83) |
Best NR hit (blastx)   | achaete-scute-like protein [Bombyx mori] (9e-73) |
GeneOntology terms    | GO:0046982 protein heterodimerization activity GO:0043565 sequence-specific DNA binding GO:0003704 specific RNA polymerase II transcription factor activity GO:0006357 regulation of transcription from RNA polymerase II promoter GO:0005634 nucleus GO:0007518 myoblast cell fate determination GO:0007417 central nervous system development GO:0007400 neuroblast fate determination GO:0007422 peripheral nervous system development GO:0003700 sequence-specific DNA binding transcription factor activity GO:0007419 ventral cord development |
InterPro families    | IPR011598 Helix-loop-helix DNA-binding IPR001092 Helix-loop-helix DNA-binding domain IPR015660 Achaete-scute transcription factor-related |
Orthology group | MCL11438 |
Nucleotide sequence:
ATGCCCATGGCGGCGGTACACGCTTACCAAAATCTCGGTGTAAACCAAAAATTGACTCAG
CTGCAAAATGCTAGACGTCTCGCACCTGCACCCGTAGATGCTCGCTGCAAAAAGAGATCT
TATCTCCATCAAACCTATCCCACTCAACCTGCTTCTGTAGCAAGAAGAAACGCAAGAGAA
AGGAATAGAGTGAAACAAGTTAATAATGGATTTGCTGCTCTACGACAACATATTCCATCA
GCTGTAACTGCGGCTTTGGCAGGCGGAAGAGGTTCTTCACGAAAATTAAGCAAAGTGGAT
ACTTTGAGACTAGCGGTTGAATACATAAGAAGCCTTAAACGATTATTAGAAGAAAGTGAA
GAAGGCTGTAATGAAGCACAAATGAGTTTGGGCTTAAGTTCAAATGGACCTCAAACACCC
CCTTTCTCAGAAGAATCCCATTCACCTGCACCCTCACTCCATTCAGAGGGTTCAACAGGT
CCAAATTGTCAAGATGCTTATGATTCCTATGAACCTATGAGTCCTGAAGATGAAGAATTA
TTAGATGTTATATCATGGTGGCAACAGCAATGA
Protein sequence:
MPMAAVHAYQNLGVNQKLTQLQNARRLAPAPVDARCKKRSYLHQTYPTQPASVARRNARE
RNRVKQVNNGFAALRQHIPSAVTAALAGGRGSSRKLSKVDTLRLAVEYIRSLKRLLEESE
EGCNEAQMSLGLSSNGPQTPPFSEESHSPAPSLHSEGSTGPNCQDAYDSYEPMSPEDEEL
LDVISWWQQQ