| New model in OGS2.0 | DPOGS200409 |
|---|---|
| Genomic Position | scaffold1611:- 10331-16991 |
| See gene structure | |
| CDS Length | 2196 |
| Paired RNAseq reads | 640 |
| Single RNAseq reads | 1470 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA008986 (0.0) |
| Best Drosophila hit | beta[nu] integrin (3e-109) |
| Best Human hit | integrin beta-1 isoform 1D precursor (4e-98) |
| Best NR hit (blastp) | beta nu integrin subunit [Aedes aegypti] (4e-157) |
| Best NR hit (blastx) | beta nu integrin subunit [Aedes aegypti] (3e-155) |
| GeneOntology terms | GO:0008305 integrin complex GO:0004872 receptor activity GO:0050839 cell adhesion molecule binding GO:0007155 cell adhesion GO:0007157 heterophilic cell-cell adhesion GO:0007160 cell-matrix adhesion GO:0016337 cell-cell adhesion GO:0007229 integrin-mediated signaling pathway GO:0005488 binding GO:0042048 olfactory behavior |
| InterPro families | IPR015812 Integrin beta subunit IPR002035 von Willebrand factor, type A IPR002369 Integrin beta subunit, N-terminal IPR013111 EGF, extracellular IPR014836 Integrin beta subunit, cytoplasmic |
| Orthology group | MCL17670 |
Nucleotide sequence:
ATGATCCAAAGACCAGAAAAACCTGTATGGGAGGTAACTGAAAACTATACGCTTCAAGAC
ATATCACCAGACAGTCATGAAGCAGTTGTGCAAATACAGCCACAAAAAATAAGGCTATCG
TTAAAGCCACGTGAAAGCAAGAAAATAAAATTCTCCTTTAGACCGGCTAGAAACTACCCT
TTAGATTTATATTATTTAATGGACCTTACTTGGTCTATGAAGGACGATAAGGAGACTTTG
GTATCTTTGAGAGACGATCTGCCGACCTTGATAAAAAACTTGACGGACAATTTTAGGATA
GGTTTTGGTAGTTTCGCTGAGAAGCCTATAATGCCCTTCATAAGTGTCGACGCGCGGAGA
CGTGAAAATCCTTGTACAGTGGAGGAACAGGCTTGTGAGGCAACTTATAGTTATAAACAT
CACTTGTCATTGACAAATCAGGTGAACGAATTTATAAAAGAAGTGAACAGTAGTTCCGTA
ACAGCCAACCTGGATAACGCCGAGGCTCAACTAGACGCTCTGGTACAGGCGATAACATGC
GATAAGCAGGTCGGCTGGTCGTCACACAGTCGGAAGATTATTATACTGCTCTCCGATGGC
CTGCTTCACACTGCGGGTGACGGAAAATTGGGCGGGGCGTCAATCAAGAATGATGAAACT
TGTCATTTAGATGAAAATGGATATTACTCGGAAGCCGCTACTTATGATTATCCGTCCATA
GCGCAAGTGTACAGAATATTAGATAAATACAAGGTAAACGTGATTTTCGCTGTGACGGAA
AACGTAAAGGCCCATTACGATAGCTTGCACCAACTGTTAATTGATTTCACTCGTGTGGCA
AAGTTAGAGAGTGACAGCTCAAACATTCTGAAGCTGGTCAAAATGGGTTACGAAGATATC
GTGAGCGTCGTTAACTTCGAAGACGACGCCGGTCCTGGACCGGTAAAGGTAAAATACTTC
ACCGATTGCGGAGTGAAAGGTTCGATGGTTGAGGCGAAGCGTTGCACGGGCGTGGAGTAC
GGCATGACACTTAACTTCGAGGCCCACGTCAGTTTGGAATCTTGTCCCGAATACAAAAAG
TCAAATCAGACTATAAGAATATCAGAAACACAATTGGGTGAGGATACTTTGACGTTGGAG
ATCCAGCTTCAGTGTGGTTGTAACTGCAAGAGTGATCTGATAGAGAACATGGACCTCACA
TGCCCGTCTAATTCACATCTCGTGTGCGGCGTCTGTCAGTGTAATAAGGGATGGTCTGGT
CCATTATGCGACTGTTCAATAGAAGATGAAGCGGCCTCAGCGGCGTTGTTGTCTCAGTGT
AAGGAGCCCAACGCTACCCGAGCTATAGCTTGTTCAGGGGCCGGCGACTGTCTCTGTGGG
AAATGTCAATGTGACAACGGTTTCAACGGCAAGTACTGTCAGTGCAAGTCGTGCGAAGTT
AGTATAATAAACCGTTTGGAATGTGGTGGTGCTGAGCATGGTGTGTGTGCTTGTGGGAAA
TGTGCCTGCGTTGCCGGCTGGAGCGGGGAAGCCTGCGACTGTACACTCGACACGGACCTG
TGTATAGCACCAGGCCGGGAGGATGTGTGTTCAGGAAACGGAGATTGCGTCTGTGGTCGT
TGTCAATGCAACAGGTTAGAGGACGGGACACTATTTTCAGGCGCATTCTGTGAGACTTGC
GAGACTTGTGAGAACCCGCTCTGTGCGAATGCGGAGGCCTGTGTTCTGTGCCACTTGGAC
AGCAATTGCACAGACGCATGTTCAATTGGCAATATGAATTACACTGTCAGTGAGAGACTG
AATGAAGTGACCAGGAATAGCGATGATGCATCTTGTATTCTGCGACGCGAGGAAGACGGT
CTGGAATGCGAATACCAATATACATACAAAGCTGGCGTCCAATCTATGATAGCCATGGAA
ATAGTCATAAGGGACAAGCTGTGCTACCAACCCACCAGTGCTAAAATAATGACGAGCTCG
CTGATCATAATGGGCTGTGTCATACTCGCCGGTTTAATAGTAATCATGGCGGTGAAAATT
GCCCAGGTCTTGTCCGATAGACGAGCATACGCCAAATTTTTACAAGAGGCCCAAGAAAGT
AGGAAGAATATGCAAGAATTGAATCCCATATATAAATCACCGATATCTGAATTCAAGTTA
CCAGAATCCTATCCGAGAGACCGGGCTGATTTATAG
Protein sequence:
MIQRPEKPVWEVTENYTLQDISPDSHEAVVQIQPQKIRLSLKPRESKKIKFSFRPARNYP
LDLYYLMDLTWSMKDDKETLVSLRDDLPTLIKNLTDNFRIGFGSFAEKPIMPFISVDARR
RENPCTVEEQACEATYSYKHHLSLTNQVNEFIKEVNSSSVTANLDNAEAQLDALVQAITC
DKQVGWSSHSRKIIILLSDGLLHTAGDGKLGGASIKNDETCHLDENGYYSEAATYDYPSI
AQVYRILDKYKVNVIFAVTENVKAHYDSLHQLLIDFTRVAKLESDSSNILKLVKMGYEDI
VSVVNFEDDAGPGPVKVKYFTDCGVKGSMVEAKRCTGVEYGMTLNFEAHVSLESCPEYKK
SNQTIRISETQLGEDTLTLEIQLQCGCNCKSDLIENMDLTCPSNSHLVCGVCQCNKGWSG
PLCDCSIEDEAASAALLSQCKEPNATRAIACSGAGDCLCGKCQCDNGFNGKYCQCKSCEV
SIINRLECGGAEHGVCACGKCACVAGWSGEACDCTLDTDLCIAPGREDVCSGNGDCVCGR
CQCNRLEDGTLFSGAFCETCETCENPLCANAEACVLCHLDSNCTDACSIGNMNYTVSERL
NEVTRNSDDASCILRREEDGLECEYQYTYKAGVQSMIAMEIVIRDKLCYQPTSAKIMTSS
LIIMGCVILAGLIVIMAVKIAQVLSDRRAYAKFLQEAQESRKNMQELNPIYKSPISEFKL
PESYPRDRADL