New model in OGS2.0 | DPOGS207961  |
---|---|
Genomic Position | scaffold340:+ 123394-128081 |
See gene structure | |
CDS Length | 2553 |
Paired RNAseq reads   | 5861 |
Single RNAseq reads   | 14040 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA000312 (2e-09) |
Best Drosophila hit   | SRm160 (7e-18) |
Best Human hit | serine/arginine repetitive matrix protein 1 (2e-17) |
Best NR hit (blastp)   | PREDICTED: similar to RE71183p [Nasonia vitripennis] (6e-22) |
Best NR hit (blastx)   | PREDICTED: similar to RE71183p [Nasonia vitripennis] (6e-16) |
GeneOntology terms    | GO:0035145 exon-exon junction complex GO:0006397 mRNA processing GO:0071013 catalytic step 2 spliceosome GO:0000398 nuclear mRNA splicing, via spliceosome GO:0071011 precatalytic spliceosome |
InterPro families   | IPR002483 Splicing factor PWI |
Orthology group | ND |
Nucleotide sequence:
ATGCAGATCAACCTGACGGGTTTCCTGAACGGCAAGAACGCGCGGCTGTTCATGGGCGAG
CTGTGGGAGCTGCTGCTGAGCGCTCAGGCCAGCGAGAACGGAATACCGGAGTCATTCACG
CAACAGAAGAAGGAGGAGATTAAAAAACGCATGGAGGAGCAACAAAAGGATAAGGACAAG
GAAAAAGACCGTCGCCGGTCACGTTCGAGGTCGCGGGACAGACGACGATCCAGGGATCGC
CGCAGGTCGCGCACACGCTCTAGAGATCGCTCTTCGGATAGAAAACATAGAAGTGGAGGC
AGCCCTCGGCGATCGAGAAGGCGCAGTAGGGACAAGAGCAGTCAGTCGAAGCCGTCGCAG
GTTGACGACATCAAATTACCAGAACCAAAAGAAAACGGAAAGTCACCTGAAAAGAAGGAA
GAACCGGAAGTGAAGGAGGAGGTCAACCACCATCCTGATACGGAGTCATCTAATGAACAA
GCCAACGATTCTGTCAAGGAAGAAAAAAAAGACGATGAACCTAAATCAAGATCTGCTTCG
GCCGATAAAACTATTTTGGAAAAACGTGAAGACAAACCAGCTGATAAAACTAGAAATTCT
TCAAGCGAACGTCGCTCTACATCAGCTTCATCGCGTGGAAGCGCTAAAAAGCGATCATCG
CACAAAAAGCGACAATATCGTTCCAACCGTGATTCCTCAACCAGTGTCAGCCCGAGGCGT
AGCTCTCGCAGGGAAAGGAGTAAATCTCGTCACCGTAGTAGCAGACGACGTTCTATAGAA
AGACGTGATAGAGAAAGAGAACGTGAGAGGGAAAGAGATAGGGAGAGAGAACGAAGACGA
AGAGAGAGGGAGAGGAGGGAAAGGTCGCGTGAACGTCGCCGATCGCTCGAAAGACGTAGA
CGTTCTCGTACACGCTCTCGACGACGTTCAAGAGACAGATCTCGTGACCGCCGTCGCTCT
CGCTCCCGCCGCCGCTCCCGCTCCCGCCGTCGCTCGGGACGCTCCCGTGACAGACGATCC
AGGGACCGTCGCTCACGCGATAGGCGATCCCGGGATAGATCAAGAGACAAGAGATCAAGG
GATAGGACTGTGAAGGATAGAAGATCACGAGACAGGAAATCCCGTGAGAGAAGATCGAGC
GATTTGATTAAAGAGCGTTTAGAAAAATCGGTTTCTATCCCGCGTAAAGAAAATATTGAG
AAGTTGCGTAAGAAGTCACCGGAACGCGTCTCAATACCGAGGGAGCGTTCCAAAGAGCAT
GTGTCAAGTTCTAGCAGGGAATCATCCGTGGCTAACGATAAAAGTGTTGTACAAAATGAG
ACTCAAGATAAACCGCCCCAATCATCTGACGACGAAGAGCGCGATGACTTTATCCCCGTC
CCCGTGCTTCGAGAGTATTCAAAGAGTCTATCGCGAACACCCTCGCCATTCCTTAGGAAA
CATGAAATGGAAAACAATAAGAAATCCGACAGATCCGGCGATGACGCGTCCGGCAGGGAA
CAGAATGAAGAGGAAGTTAAAGTGCAGGAGGTGAAGAAATCGAAACGTAAAGGACGTCAG
TCGGAGTCGGAAAGCGAAAGCAGTGAGGGGCTCTCCAAATCTAAGAATAAGTCCAAGCTT
AAGCGTAAAGAAAAGAGTACATCAAAGAAGTCGAAAAAACCGAAAAAGGAGAGTTCTTCC
AGCGACAGTGAATCTGAGGACTCTTCTTCTAGTGATTCCGAAGAAGATAGAAAGAAGAAA
GCTAAGAGGGCAGGTAAAAAGAAAGTGGGAAAGAAGTCTAGGAAGAAGAGGGCTAGGTCC
TCTAGTTCTGATTCAAGTTCTGAAGAGGAGGTGAAACATAAGAGTTCTAAAAGTAAGCAG
AAGAACATTCCAGAAGAATCAGATGCGGACAAGAAGTCTAAGAAGAGGAGTAAAGATGCC
AGTATGCCACGAACCGAAAAAGGAGACGGTAAACTGGTTAAGTCCAAGAAAGTAGCCAAT
TCTGAGGACTCGCGAGATGACAGTTCTGACAGCGATGAAAAATCTGCTAAAAAGAAAGCT
AAACATGACTCTACATCTTCGGAAAAGGAAGTAAAGCGTAAGAAGGCTGAAATGCTTAAA
GAAAAGATTGCTTCCCCTGAAATAATTAAACCAAGAAAGAGCGATGATAAAGGTTCTAAA
GCTAAACATGCAGATGATGTGAAACCCAAGAGCCGCGAAGAAACTGAAAAGAAAGCTAAA
AAGAGAGAAAAAGAAGATTCATCGTCGGACAGTGATCAGATTTCAAAGAAGAAAGCTCGC
AAGAAGGTTTCCGATTCGGAATCCGATTCAGAAAGCGACGAACCTAAGAAGTCTAAGAAA
GCTAAGAAACATAAGAAGCATTCAAAGAAGCATAAGAAACACAAAAAACACAAGAAATCG
TCCAAGCGTAAAGACGATTCATCCGACAGTGACGAAGCGGAGGAGGAGGAGGAGGAAGAC
GGCAAAGTAAACAACGAGGACCTGGAAAAGAAACTACGCGAACGGGCTTTGAAGTCTATG
AAGAAACAAACGAGCGTGTCTGGCTCCGACTAA
Protein sequence:
MQINLTGFLNGKNARLFMGELWELLLSAQASENGIPESFTQQKKEEIKKRMEEQQKDKDK
EKDRRRSRSRSRDRRRSRDRRRSRTRSRDRSSDRKHRSGGSPRRSRRRSRDKSSQSKPSQ
VDDIKLPEPKENGKSPEKKEEPEVKEEVNHHPDTESSNEQANDSVKEEKKDDEPKSRSAS
ADKTILEKREDKPADKTRNSSSERRSTSASSRGSAKKRSSHKKRQYRSNRDSSTSVSPRR
SSRRERSKSRHRSSRRRSIERRDRERERERERDRERERRRRERERRERSRERRRSLERRR
RSRTRSRRRSRDRSRDRRRSRSRRRSRSRRRSGRSRDRRSRDRRSRDRRSRDRSRDKRSR
DRTVKDRRSRDRKSRERRSSDLIKERLEKSVSIPRKENIEKLRKKSPERVSIPRERSKEH
VSSSSRESSVANDKSVVQNETQDKPPQSSDDEERDDFIPVPVLREYSKSLSRTPSPFLRK
HEMENNKKSDRSGDDASGREQNEEEVKVQEVKKSKRKGRQSESESESSEGLSKSKNKSKL
KRKEKSTSKKSKKPKKESSSSDSESEDSSSSDSEEDRKKKAKRAGKKKVGKKSRKKRARS
SSSDSSSEEEVKHKSSKSKQKNIPEESDADKKSKKRSKDASMPRTEKGDGKLVKSKKVAN
SEDSRDDSSDSDEKSAKKKAKHDSTSSEKEVKRKKAEMLKEKIASPEIIKPRKSDDKGSK
AKHADDVKPKSREETEKKAKKREKEDSSSDSDQISKKKARKKVSDSESDSESDEPKKSKK
AKKHKKHSKKHKKHKKHKKSSKRKDDSSDSDEAEEEEEEDGKVNNEDLEKKLRERALKSM
KKQTSVSGSD