| New model in OGS2.0 | DPOGS210349 |
|---|---|
| Genomic Position | scaffold1154:+ 6206-11272 |
| See gene structure | |
| CDS Length | 3024 |
| Paired RNAseq reads | 355 |
| Single RNAseq reads | 853 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA011911 (0.0) |
| Best Drosophila hit | CG32206 (4e-141) |
| Best Human hit | ND |
| Best NR hit (blastp) | PREDICTED: similar to AGAP006059-PA [Tribolium castaneum] (0.0) |
| Best NR hit (blastx) | PREDICTED: similar to AGAP006059-PA [Tribolium castaneum] (0.0) |
| GeneOntology terms | GO:0005575 cellular_component GO:0003674 molecular_function GO:0008150 biological_process |
| InterPro families | IPR002172 Low-density lipoprotein (LDL) receptor class A repeat IPR000859 CUB IPR023415 Low-density lipoprotein (LDL) receptor class A, conserved site |
| Orthology group | MCL16050 |
Nucleotide sequence:
ATGTCAGCAGAAGGGAGGGTGTGGATGTGTCTGGTGCTGGCCTTGGCAGCTCTGTGGAGT
CGCGCGGCCGCCGGCGGATGTGGCGTGGCGGAGTTCACGTGCCGTAGTGGAGCTTGCGTA
CGCCTCGATGCTTACTGCGACGGCGAAACGCAATGTCCTGATGGGAGTGATGAACCGCCA
CACTGCTCGGTTTGCAATCGGACGTATTACGGACGGATCGGCGTAGCTTATGGACTGGGA
CTGCGTGGAGCGCCGAGATCTCCTTTTCTGTGTCATCTCACGTTTACCGCTGGCGGAGGA
TCCCACGGAGATCTCGTTCAACTGGCTTTCGACGAGTTCCGTGTGGGTCGCTATGAATCG
GGCGCCTTGGACGGGTGTCCTGATGGCTACATGCAGTTATCGGAACTGGGTCGTCCTTTC
ACTGGTGGCTCGTGGTGTGGTTCCGCAGAAGGTGTCGCTCTTTATTACAGTGAAACCGCA
ACAGTTACCGTATCAGTGAAGTTGTTTCGAGCTCGTCTTGGAGAACCTTTTGGTTTCAGA
CTAAGGTACAAGTTCCTTGCACAGCGTGATGCTATCGTAAGATTTGGAGCATTGGAAGCA
CCTTTGGAACGAGGGTCCGTGTCGCCTGGAACTTACTGTACGAGAACTTATGAGGAATGT
CACCGAAAAGCCTGTCGCCTCCAGAGCCCCAACTACCCCGGCATGTACCCGAGAAATGTA
ACTTGTTACTGGAGTCTGCGTCAGAAGGACATCCCGACATGCAAGCATGCTATGATATCA
GTTCGCCAGCTATATTCGCATAAAATGCAAATAAAACGTTCAATTTCGATGGCCAGTTTA
AACAAGACGGGTCGTGCGGTGCGCGCGTGGCGCGAGTGTACGGGAGAGCGAGATCGCCTC
ATTTTCTATGACGGAGCGTCTACGGACGACCCCGTGCTGGTGGAGTATTGCGGCGGGGAC
TGGCTGCCTCCGGTCACTTCCCGGGGACCAGAGATGCTGGTTGCTTTCCACTCGTCCCCA
TTTAGCGCCCCTCCGCGGGCACCCACGCCACACGCACCACTCAGAGGATTTGAACTTGAT
GTAGACGTCATTTTCGCAGATTCTGATTCTCTAGATTATTCAAGGGAAGCAAAACGTTGT
GAATTTCATGTTAAGGCTTCTTCGTCGGAGGAGGAATTTAATGCCACCACGGTAAATGTG
AGAGGTCGCCGGGGACGTTTGCATGCACCGACTCACACGCTTCCACCCAATACTACATGC
ACTTGGACATTTCATGGTCGTCCTGGTGATCTGGTCTGGATCTATTTTTCGAGTTTTACA
CATTATTCTCTCGTGGAAGGACGACGGACGGAGAGTAACGAACGTGAAGATGACGCTGCA
GTCACAGTAACTTCACGACATTTATCGGAGTATTCCCGTTCTGCTGGAGGGAGCGGCGTT
TGCGCCGTGGAGCTTCGAATTTGGGACGGTGGTGGTGTAGACGAGGCTGCTGATCTTCTG
GGTCACTACTGTGACTCTACACCCTCTCTCTGCGCTCGAGCCGCTCTCGCCAACGCCACG
CGATCTCCTCGACCATGCGCACCTCCAGATGGCTACGTATCTGCGGCTGCACTAATGTCT
CTCGCAGCTACATCACTTCCTGGTACCGCTACTCATCCCTTGGCATTCGTGATGCACTAT
GAATTTGTTGATGCTCGGTTAGAAGGTGTCCTGTTACCGATCTCGGAAACGCGTGTCCCA
GTCGAGCCAGCGGAGTGTGCGAGGAGACTTACAGTACCTGGGGTATTTTCATCTCCTCGT
AACGCATTGTGGTTCGGGCGTGGAGGTGCAAAAAGACTTCGCTGTGTATACAGATTACAA
GTTGAAAGAGCTAGTATTGAATTACGTCTTTTAGCAGCAGCTTTTGGACGAGAGCCTAAA
TGTTCTACAAGAATAGATCCCTTAACGGGACGTTCGGCATGCATTCCTGATCCTATTGAC
CCTCTTGATCTAAGACCTAGTGATGCCCCCGTTGATTTCGATTATGATGAAAATCCATTA
CGCGTACCACATTTACGGATATACGAGTCACCTTGGCCAGGATATAGAGTACCTGTAGGA
TGTATATGTGATAATAGCAGTACACCTTTGATTATATCGAGCGGTGGCCCTTCAATGGAA
TTAGAACTGGTGGCCAGCACCTTGGCAGCGAACGAGGATCACCGCCACGTACACTTCCAA
GGAGAGTGGGCCCGCGGCCCGGCCACCTCTGAGTGTGCTATAAGTCGCCGTCTGCCACCA
CCCGGGGCATCGGTGCGCCTTTTGCACCCATACAACGGGAATAAGATGTCAGAATGTGGA
GAAACGCCTTTTCTGTTAGTGGCTCGAGGTAATCGCTCAGTATTTCTTCGAATCTGGGGC
GAAGAATTGCCTGCTTCAGCTCCTACCTCCGAGGCACCATTATGTCACACAACAAATCGT
GTTTTGGTTTACGAGTCTCATTCATCAAGATTACTAAAAGCAGTCTGTCCTGGTGGCGAT
GACTCACGAACAGTCCAAGTGTTCACCGAGGAATGGTGGGCCAGAAGCATCGGTCGTGAA
GCCGCACTTATGGTGGTGTGGTCCGCAAGAGAGGCGGGATCCGCACGATTCACGTGGATG
GAGGTCTGGCGGCCGGCAGGAGCGACTCCGGGAGCTGTTAGTGGAAACATTTCTTCGTGC
GCTCACGAATGTGTGTCTCTGAGCGCTTGTATGGCGGGCGCGCTGTGGTGCGACGGTTCA
GTGGATTGCCCAGGCGGCAGTGATGAGGCCGGCGCTTGCGGGGCGGGAGCACGACTTTTG
GCAGCATTGGGTGCACCTGCGGCTGCCGGAGCAGCAGGCGCTTGCGGCGTAGCTGCGGCA
CTAGTGCTACTTGCCGCTTTAGCACTGCGCCGGCGCCGCTCTCGACGAGACAAACGCTTA
CTTGGTGCTCTGGCGGCCGGCCGCCGATTCACCGAAGAGCTTCTGTACGATGGATCACGT
ACGTCTTCAGTGACGTCATCTTGA
Protein sequence:
MSAEGRVWMCLVLALAALWSRAAAGGCGVAEFTCRSGACVRLDAYCDGETQCPDGSDEPP
HCSVCNRTYYGRIGVAYGLGLRGAPRSPFLCHLTFTAGGGSHGDLVQLAFDEFRVGRYES
GALDGCPDGYMQLSELGRPFTGGSWCGSAEGVALYYSETATVTVSVKLFRARLGEPFGFR
LRYKFLAQRDAIVRFGALEAPLERGSVSPGTYCTRTYEECHRKACRLQSPNYPGMYPRNV
TCYWSLRQKDIPTCKHAMISVRQLYSHKMQIKRSISMASLNKTGRAVRAWRECTGERDRL
IFYDGASTDDPVLVEYCGGDWLPPVTSRGPEMLVAFHSSPFSAPPRAPTPHAPLRGFELD
VDVIFADSDSLDYSREAKRCEFHVKASSSEEEFNATTVNVRGRRGRLHAPTHTLPPNTTC
TWTFHGRPGDLVWIYFSSFTHYSLVEGRRTESNEREDDAAVTVTSRHLSEYSRSAGGSGV
CAVELRIWDGGGVDEAADLLGHYCDSTPSLCARAALANATRSPRPCAPPDGYVSAAALMS
LAATSLPGTATHPLAFVMHYEFVDARLEGVLLPISETRVPVEPAECARRLTVPGVFSSPR
NALWFGRGGAKRLRCVYRLQVERASIELRLLAAAFGREPKCSTRIDPLTGRSACIPDPID
PLDLRPSDAPVDFDYDENPLRVPHLRIYESPWPGYRVPVGCICDNSSTPLIISSGGPSME
LELVASTLAANEDHRHVHFQGEWARGPATSECAISRRLPPPGASVRLLHPYNGNKMSECG
ETPFLLVARGNRSVFLRIWGEELPASAPTSEAPLCHTTNRVLVYESHSSRLLKAVCPGGD
DSRTVQVFTEEWWARSIGREAALMVVWSAREAGSARFTWMEVWRPAGATPGAVSGNISSC
AHECVSLSACMAGALWCDGSVDCPGGSDEAGACGAGARLLAALGAPAAAGAAGACGVAAA
LVLLAALALRRRRSRRDKRLLGALAAGRRFTEELLYDGSRTSSVTSS