| New model in OGS2.0 | DPOGS200728 |
|---|---|
| Genomic Position | scaffold1461:+ 10615-19375 |
| See gene structure | |
| CDS Length | 1566 |
| Paired RNAseq reads | 4108 |
| Single RNAseq reads | 9562 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA001126 (0.0) |
| Best Drosophila hit | Rab escort protein (5e-78) |
| Best Human hit | rab proteins geranylgeranyltransferase component A 2 (2e-76) |
| Best NR hit (blastp) | PREDICTED: similar to Choroideremia [Acyrthosiphon pisum] (4e-141) |
| Best NR hit (blastx) | PREDICTED: similar to Choroideremia [Acyrthosiphon pisum] (4e-127) |
| GeneOntology terms | GO:0004663 Rab geranylgeranyltransferase activity GO:0005968 Rab-protein geranylgeranyltransferase complex GO:0006886 intracellular protein transport GO:0043087 regulation of GTPase activity |
| InterPro families | IPR002005 Rab GTPase activator IPR016664 Rab protein geranylgeranyltransferase component A, eukaryota IPR018203 GDP dissociation inhibitor |
| Orthology group | MCL11240 |
Nucleotide sequence:
ATGGACGACGATTTACCTACAGACTTCCAGGTCATCGTCGTGGGGACGGGCATGGTTGAG
TCCATCGTAGCTGCAGCATGCAGTCGAATAGGCAAAAATGTGCTACATCTAGACTCGAGT
GACCACTATGGGGGTCTTTGGGCCTCATATAATTTTGAGGGTCTTCAGAAATTTATTAAG
GAAATTAACTCGGACCCAAACAGGCAACTCCAGGTGTACAACTTGATTGAAAAGTGGTAT
ATTGATAAAGACTCACCTCAAGAGGAAACGAAACAAGAGACTGAAGATGAAAAGACTGAG
CCCCCCAAGAAGATATGGAGCCAAGCCGACTTTGCTTCCGAGTACAGGAAGTTTAATATT
GACATGACACCAAAGCTGCTGTTTTCCCGGGGGCCGTTAGTGGAGCTCCTAATATCTTCG
AATATTGCTCGTTATGCTGAGTTCCGATGCGTGACACGTGTTCTCACTTGGCTCAATGAC
AAGTTGAATCCTGTCCCCTGTTCCCGGGCTGACGTGTTCGCTACGGAGGCTGTCAGCATC
GTGGAGAAGAGGATGCTCATGAAAATGCTCACTTCCATCGTAGGGTACAATGAAGAAGAG
ATGGACAATGAATTTAAGGATTGGACCGACAAATCCTTCAAGGACTACCTGACTCACAAG
GGTCTGACACCGAATCTGATCCACTACGTGTTGTACGCTATCGCCGGCGGTTCTGACGCT
ATGCCGTGTCTGGAGGGTGTTAGGGAATGCAAGAAGTTCCTGATGAGTCTCGGCCGTTAT
GGGAACACGCCGTTCCTTTGGCCGATGTACGGCAGCGGGGAACTGCCTCAGGGCTTCTGT
CGACTATGCGCGGTATTCGGCGGCGTGTATTGCTTGAATCGTCCGATAGATTCGGTCGAG
ACTAAGACGGGTGACGAAGGGAAAGAGATCGTGGTCATCGGCAGCAAGGCCAAGAACTTG
AATTGCGATCATCTAGTCATCGGTATAAACGAGTGTCCCAAGGATCTACTGTCCTCGGAG
CCGAGCGAGAGCTCTGATATATCCAAGGCTATATTCATTACCAATGGCACTATAATGCCA
AGCGAGAAAGAACCGCTGACCCTACTGAGATTCCCGCCGCTAGATGAAGGTGACAACCCT
GTTACTGTTCTCGAAGTCGGACCAGCCACCGGCTCCTGCCCTAAAGGCCTCTTCGCCGTT
TACTTCATAACGAACAAGGTTAAGGATGCCGAGAGCGATCTCATGAAGTACGCGGAGAAG
ATCTTCGACATGACTGGAGACCAGACCAAGGCTGGAGACAAGCCGACGTGCCTGTGGTCT
CTGTTCTACAACGTGAAGGATGTGAGCGCGGGAGTACGTGACGGCGTTGAGACGGTCCAC
GTGTGTGCCGGACCAGACGCCGGGCTGGACTTCGACCGCGCCGTACTCCAGGCGGAACAA
ATCTTCAAGAAGATCTGCCCGGGCGAGGAGTTCTTGCCCCGCGCCCCGGATCCTGAAGAC
ATCGTCTTCGAGGATGACGTCACTCACGGGCCGGAGTTCCGCGGCGACGAAGGAGACAAA
GAGTAA
Protein sequence:
MDDDLPTDFQVIVVGTGMVESIVAAACSRIGKNVLHLDSSDHYGGLWASYNFEGLQKFIK
EINSDPNRQLQVYNLIEKWYIDKDSPQEETKQETEDEKTEPPKKIWSQADFASEYRKFNI
DMTPKLLFSRGPLVELLISSNIARYAEFRCVTRVLTWLNDKLNPVPCSRADVFATEAVSI
VEKRMLMKMLTSIVGYNEEEMDNEFKDWTDKSFKDYLTHKGLTPNLIHYVLYAIAGGSDA
MPCLEGVRECKKFLMSLGRYGNTPFLWPMYGSGELPQGFCRLCAVFGGVYCLNRPIDSVE
TKTGDEGKEIVVIGSKAKNLNCDHLVIGINECPKDLLSSEPSESSDISKAIFITNGTIMP
SEKEPLTLLRFPPLDEGDNPVTVLEVGPATGSCPKGLFAVYFITNKVKDAESDLMKYAEK
IFDMTGDQTKAGDKPTCLWSLFYNVKDVSAGVRDGVETVHVCAGPDAGLDFDRAVLQAEQ
IFKKICPGEEFLPRAPDPEDIVFEDDVTHGPEFRGDEGDKE