New model in OGS2.0 | DPOGS212308  |
---|---|
Genomic Position | scaffold2644:- 13699-14115 |
See gene structure | |
CDS Length | 417 |
Paired RNAseq reads   | 96 |
Single RNAseq reads   | 519 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA001825 (4e-52) |
Best Drosophila hit   | CG17768 (5e-45) |
Best Human hit | U6 snRNA-associated Sm-like protein LSm4 (1e-43) |
Best NR hit (blastp)   | GL19160 [Drosophila persimilis] (2e-50) |
Best NR hit (blastx)   | PREDICTED: similar to LSM4 homolog, U6 small nuclear RNA associated [Apis mellifera] (2e-47) |
GeneOntology terms   | GO:0003674 molecular_function |
InterPro families    | IPR006649 Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type IPR010920 Like-Sm ribonucleoprotein (LSM)-related domain IPR001163 Like-Sm ribonucleoprotein (LSM) domain |
Orthology group | MCL14891 |
Nucleotide sequence:
ATGTTACCGCTATCATTATTAAGAACCGCCCAGAACCATCCCATGTTGGTGGAACTCAAG
AACGGCGAAACATACAACGGACATTTAGTTAGTTGCGATAATTGGATGAATATAAATTTA
AGGGAAGTAATTTGCACGTCCCGGGACGGCGACAAGTTCTGGCGGATGCCCGAATGCTAC
ATCCGGGGGAGCACCATCAAATATCTCAGAATACCAGACGAAGTTATCGACATGGTAAAG
GAAGAGACACAAGTGAAATCCCGCGGCCGAGGCGAGATCTCCAAAGGCCGCGGCGGTCAG
AACATGAGATCTGGTCGAGGTGGCAGCCGCGGCGCCTTCGGCAACCGTGGAAGAGCGGCG
CCTCTGTCGCGCGGAGGAGGCAACGCGGGCCGGCCGCAGAACAAGAATAAAAAGTAG
Protein sequence:
MLPLSLLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEVIDMVKEETQVKSRGRGEISKGRGGQNMRSGRGGSRGAFGNRGRAA
PLSRGGGNAGRPQNKNKK