| New model in OGS2.0 | DPOGS212310 |
|---|---|
| Genomic Position | scaffold2644:+ 3771-11851 |
| See gene structure | |
| CDS Length | 2265 |
| Paired RNAseq reads | 464 |
| Single RNAseq reads | 1409 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA001833 (7e-117) |
| Best Drosophila hit | Dicer-1 (7e-130) |
| Best Human hit | endoribonuclease Dicer isoform 1 (2e-91) |
| Best NR hit (blastp) | PREDICTED: similar to dicer 1 [Acyrthosiphon pisum] (3e-153) |
| Best NR hit (blastx) | dicer-1 [Blattella germanica] (1e-144) |
| GeneOntology terms | GO:0003725 double-stranded RNA binding GO:0016443 bidentate ribonuclease III activity GO:0030422 production of siRNA involved in RNA interference GO:0016246 RNA interference GO:0005515 protein binding GO:0004386 helicase activity GO:0005524 ATP binding GO:0035196 production of miRNAs involved in gene silencing by miRNA GO:0035087 siRNA loading onto RISC involved in RNA interference GO:0016442 RNA-induced silencing complex GO:0031054 pre-microRNA processing GO:0035195 gene silencing by miRNA GO:0042078 germ-line stem cell division GO:0005737 cytoplasm GO:0005634 nucleus GO:0045448 mitotic cell cycle, embryonic GO:0007279 pole cell formation GO:0033227 dsRNA transport GO:0007367 segment polarity determination GO:0048813 dendrite morphogenesis |
| InterPro families | IPR000999 Ribonuclease III |
| Orthology group | MCL11509 |
Nucleotide sequence:
ATGTCCGACAGTGATGATGACACCGACACTAGCGGCTTCTGCAGCAGTAAAAATACTAAC
GCGGCGATGGGAGTTAGGATAGAGTACAAAACCGCTCACGAAGCTGAAGCTGTGGACATA
GAACGTCGAAGGCCTATCGCGCCGGCCCCTCAACCGGATGCACTTGATGACGCTCGTGAC
TTGAAGGAATGGGGACAGGTGTTGAGGGAAGGGACCGCCCCAGAAGAGTATGTGAAGAAG
TTCAAGAACGCAGTATTGAAACACGAAGCTGATATAAAGGATAAAGATTATTTAATTGAC
AAGGACACACCTATAGTTGAGTTACTTCCTGAAACTACGAAAGATTTAGACAAAACTAAT
AGTGAAATATTGAAAGTAACTATTAAAAGTGATTCAAATTTAATGAACGGGGACGACACA
TCGACAATAGAAGTTTGTGATCCCGTTCATACACAGACGGAAGATGTACAAATAAAAGAT
AAAATAGATAAAGATAAAAATATAACAGATTTCATAGACGACATATTTCCTTACGGTCAT
CTATTGGAAGTCGAAAACGGTCAAATAACATTAGAGTCGATAGAGAGAAACAAAAGATTA
TTATTCGCCGAAATAAAGAATAGTTTGAGTGAAGAAGAGATGAAGAAGATGCAATGCTTC
TCGATGAAAGACGTTGACATAGATTCGCCGGACTACGTTAATGAGAAAATAGTGAACGTT
GGCTTCGATACCAACGAGAAATATATAGATAGGGTCAATGATTGGAGTGAACGGGATTTA
AAACCCTATTACCTAGACAGTAATGGTATTAATGGCAAGGAATTCGATTTCGACTCTCAG
CCAGACTTGGAGGGACATCCGGGGCCCAGCCCTAGTGTTATTCTCCAGGCTTTGACGATG
TCGAACGCCAACGACGGCATCAACTTGGAGAGGTTAGAGACGATAGGTGACAGTTTCCTG
AAATTCGCCATAACAGCGTATTTGTATTGCGCCCTACCCGCGGTGCACGAAGGAAAGCTG
TCGCATATGAGAAGCAAACAGGGTGACGTCAAGGACGGGGAAAATGAGCCACAAGTCGAC
AGCACCGGCTGTTTTATACCTTACAATCTTATAACACAGCATAGCATACCAGACAAATCG
ATAGCTGACTGTGTGGAGGCCTTGATAGGCGCGTATCTATTGGAGTGTGGTCCACGAGGC
GCTCTCTTGTTCATGTCCTGGCTCGGTATCACGGTGCTGCCAACTCACACGGTGCCGTTG
CCAGAGAATCACCCGTTTGTAGTCAAAATGAGAAATAGACAGGATGACAAAGAGACGGAT
ATTAGTGATGAGGAGGACGATAAGTGGTGTTGGGACGGACGGCCGCCCGGGAGCCTTAAA
CCTCACAAGGACAGTGAAGGGCGTTGGGTGCAGACAATTTATGGCGCGTTGAAATCGCCT
CCGTCCCCGCTGCTAAGGTACATCGAAGATCCCGAGGGAGAGCTGGAGCGGATGCTATCA
GGTTACGATGCGTTGGAAAACACGCTGCAGTACCGCTTCCGCGACCGCTCGCTGCTACTG
ACCGCGCTCACGCACGCCTCGTGTCACAACAACACGCTCACGGACTGTTACCAGAGACTG
GAGTTCTTGGGGGACGCTATACTCGACTATTTGATAACCCGTCACCTGTACGAGGACCCT
CGCCGCCACTCTCCCGGCGCCCTCACGGACCTGAGGTCAGCTCTCGTCAACAACACCATC
TTCGCGACGCTGGCGGCTAGACACGGCTTCCACAAGTACTTCCGCCATATGTCTCCAGGT
CTCAACGAGGTGTTGACGAAGTATGTTAAGATTCAAGAGGAGAATGGACACTCCATCAGC
GAGGAGCATTATTTGATACAAGAGGATGAAATGGAGCAAGCTGAAGATGTAGAGGTTCCG
AAGGCTCTCGGGGACTTGTTCGAGTCAGTCGCTGGAGCTATATTCCTCGATTCTGGTATG
TCCCTGGCGGCCGTGTGGCGCGCAGTCGGCGGTCTTCTGCGGGCGGAGCTAGACGCGTTC
AGCGCGGCCGCTCCCAAGTCACCCGTCAGGGAGCTCTTGGAAGCGGAACCTGATACAGCC
AAGTTTGGTAAACCGGAACGTCTCGCGGACGGCCGTCGCGTGCGCGTGTGTGTGGAGGTG
TTCGGCCGCGGATCCTTCAAGGGAGTCGGTCGTAACTACCGCATCGCTAAGGGTACAGCC
GCGAGGTGCGCGCTCCGGCACTTACGGTCCGTGAGACCGAGGTGA
Protein sequence:
MSDSDDDTDTSGFCSSKNTNAAMGVRIEYKTAHEAEAVDIERRRPIAPAPQPDALDDARD
LKEWGQVLREGTAPEEYVKKFKNAVLKHEADIKDKDYLIDKDTPIVELLPETTKDLDKTN
SEILKVTIKSDSNLMNGDDTSTIEVCDPVHTQTEDVQIKDKIDKDKNITDFIDDIFPYGH
LLEVENGQITLESIERNKRLLFAEIKNSLSEEEMKKMQCFSMKDVDIDSPDYVNEKIVNV
GFDTNEKYIDRVNDWSERDLKPYYLDSNGINGKEFDFDSQPDLEGHPGPSPSVILQALTM
SNANDGINLERLETIGDSFLKFAITAYLYCALPAVHEGKLSHMRSKQGDVKDGENEPQVD
STGCFIPYNLITQHSIPDKSIADCVEALIGAYLLECGPRGALLFMSWLGITVLPTHTVPL
PENHPFVVKMRNRQDDKETDISDEEDDKWCWDGRPPGSLKPHKDSEGRWVQTIYGALKSP
PSPLLRYIEDPEGELERMLSGYDALENTLQYRFRDRSLLLTALTHASCHNNTLTDCYQRL
EFLGDAILDYLITRHLYEDPRRHSPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPG
LNEVLTKYVKIQEENGHSISEEHYLIQEDEMEQAEDVEVPKALGDLFESVAGAIFLDSGM
SLAAVWRAVGGLLRAELDAFSAAAPKSPVRELLEAEPDTAKFGKPERLADGRRVRVCVEV
FGRGSFKGVGRNYRIAKGTAARCALRHLRSVRPR