Genomic Position | scaffold209:- 77912-79219 |
---|---|
See gene structure | |
CDS Length | 1308 |
Paired RNAseq reads   | 41 |
Single RNAseq reads   | 117 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA011163 (8e-24) |
Best Drosophila hit   | ND |
Best Human hit | ND |
Best NR hit (blastp)   | endonuclease-reverse transcriptase [Bombyx mori] (0.0) |
Best NR hit (blastx)   | endonuclease-reverse transcriptase [Bombyx mori] (0.0) |
GeneOntology terms    | GO:0003964 RNA-directed DNA polymerase activity GO:0006278 RNA-dependent DNA replication GO:0005622 intracellular GO:0008270 zinc ion binding GO:0003723 RNA binding |
InterPro families   | IPR000477 Reverse transcriptase |
Orthology group | MCL10020 |
Nucleotide sequence:
ATGGCCTTCAAAAAGGAAGACAAATCCCTGCTGAAGAACTATCGACCCATTTCCTTGCTA
AGAAACGTCTATAAGCTGTTTTCAACAGTGATCACAAACTATCTTGCGCGAATACTCGAC
GAATTCCAACCACCGGAACAGGCTGGGTTTCGGAGCGGATACGGCACCATAGACCACATT
CACACGGTGCGGCAGATTATACAGAAGACCGAAGAGTATAATCAGCCCCTTTGTCTAGCA
TTCGTGGACTATGAGAAAGCTTTTGACTCGATTGAAACTTGGTCTGTTCTGGAGTCCCTG
CAACGTTGCCAAGTTGATTGGCGGTATATCCAAGTGATAAGATGTCTCTACGAAGCCGCC
ACCATGTCCGTCCAAGTACAGAATCAGCAAACAAGTCCCATACCGTTGCATCGAGGAGTG
AGACAGGGGGACGTTATCTCCCCGAAACTGTTCACAAATGCAATGGAGGATATGTTTAAG
ACGCTGCGCTGGAAAGGACGAGGTATTAACATTAATGGCGAACACATCTCTCACTTGCGA
TTTGCAGACGACATCGTCATTATGGCAGAAACGCTGCAGGACCTACAACAGATGCTTGAT
GACCTGGCTGACTCTTCTATACGCATCGGCCTACGGATGAACTTGGACAAAACCAAGGTC
ATGTTCAATGAACATGTTCTACCGGAACCGATTGCAGTCCACGGTGTCGTTCTCGAAGTT
GTTCAAAAATATGTCTATCTGGGGCAAGTATTGCAGTTGGGTAGAAACAATTTCGAGGAC
GAGGTGAGTAGAAGAGTTCAGCTGGGTTGGGCAGCGTTTGGGAAGTTACGCCGAGTCTTA
ACATCGTCGATCCCACAATGCCTAAAGACGAAAGTCTTCAATCAGTGCGTCCTACCCGTA
ATGACTTACGGAGCCGAAACGTGGACACTAACTGTACGGCTAGTTCACCAACTCAAAGTC
GCTCAGCGAGCTATGGAAAGGGCTATACTCGGAGTTTCTCTGAGGGATCGCATCAGAAAT
GAGGTGATTCGGCAGAGAACCAAGGTCATCGACATAGCCCACCGGATTAGCAAGCTGAAG
TGGCAGTGGGCTGGCCATATTAGCCGCAGAACCGACAACCGTTGGGGTAAACGAGTTCTT
GAGTGGAGACCGCGTCTCGGCAAACGTAGTGTAGGACGTCCTCAGGCAAGGTGGAGTGAC
GATTTGCGCAAGATGGCTGGCAGGAGCTGGATGCGAGTAGCCGAAAATAGATCTCAGTGG
CGTGCAATTGGAGAGGCCTATGTCCAGCAGTGGACCAGTATAGGCTGA
Protein sequence:
MAFKKEDKSLLKNYRPISLLRNVYKLFSTVITNYLARILDEFQPPEQAGFRSGYGTIDHI
HTVRQIIQKTEEYNQPLCLAFVDYEKAFDSIETWSVLESLQRCQVDWRYIQVIRCLYEAA
TMSVQVQNQQTSPIPLHRGVRQGDVISPKLFTNAMEDMFKTLRWKGRGININGEHISHLR
FADDIVIMAETLQDLQQMLDDLADSSIRIGLRMNLDKTKVMFNEHVLPEPIAVHGVVLEV
VQKYVYLGQVLQLGRNNFEDEVSRRVQLGWAAFGKLRRVLTSSIPQCLKTKVFNQCVLPV
MTYGAETWTLTVRLVHQLKVAQRAMERAILGVSLRDRIRNEVIRQRTKVIDIAHRISKLK
WQWAGHISRRTDNRWGKRVLEWRPRLGKRSVGRPQARWSDDLRKMAGRSWMRVAENRSQW
RAIGEAYVQQWTSIG