| New model in OGS2.0 | DPOGS210797 |
|---|---|
| Genomic Position | scaffold1772:- 6392-10800 |
| See gene structure | |
| CDS Length | 1467 |
| Paired RNAseq reads | 364 |
| Single RNAseq reads | 971 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA007112 (2e-171) |
| Best Drosophila hit | Sex-lethal interactor, isoform A (8e-73) |
| Best Human hit | DNA-directed RNA polymerase III subunit RPC5 (1e-67) |
| Best NR hit (blastp) | PREDICTED: similar to RNA polymerase III 80 kDa subunit RPC5 [Apis mellifera] (2e-87) |
| Best NR hit (blastx) | hypothetical protein AaeL_AAEL011701 [Aedes aegypti] (1e-85) |
| GeneOntology terms | GO:0005515 protein binding GO:0005685 U1 snRNP GO:0000398 nuclear mRNA splicing, via spliceosome GO:0003899 DNA-directed RNA polymerase activity GO:0006350 transcription GO:0005634 nucleus |
| InterPro families | IPR006886 DNA-directed RNA polymerase III subunit Rpc5 |
| Orthology group | MCL14638 |
Nucleotide sequence:
ATGGACGAAGAGGATCCAGTTGTCCAAGAGATCCCGGTCTATCTTTCACAAGCGCTTTCA
GAGCATTTATATATTTATCAATACCCGGTTAGACCGGCGAATAGGGATTGGAAAGATATC
AAAGTTATCAATGCCTCTATAAAACCAAAAAATCAACTTGTGCGAATGGAAATCGGTCTG
GATACGTATAGTGAAAAATATTGTCCCTCTAAAGGAGAACAGATAGCTTTGAATACTGAT
GGACCACAGGAATCAAAATACATTAAAGATAAGGAAAAAGAGAGATCTCAGTATTTTAGA
AATGGTATAATGGACAAGATTGTGTATGAAAGCAGCTCGCCATGTTTAGAAACCAAGCAT
TACGCTGTAGCTATTCTACAGGATAAGGAATTACATTGTACACCTATAAAAGGTATTTGT
CAGCTGAGACCGTCATATTCATATTTTGATAAACAAGACAAAAGGAAGATCGACAAGAGC
AAAGCCGAGAATTCCGATGACGAGGAAAAAGAATCGGAACCCCAACAGGTGACTGTAAAG
TTCTCAAGAGCGGAAACGGATGTGGCGAAGAAAGCGAGGGAAAAATCATATGAATCCATC
TCACAGAAGATAGCCAATGAACCTTGGTACGATGCATTCTGGAGAAAATTGGATGACGAT
CATGCTGATTTGGAGCGTCTAAAGTTATTCAGCTCAACAACATCAGACGGTTCAGCTCTA
ACTTTGGGTGCGACAGAGTATATAAACACCTTGGTGCCTTCGCTCACTGACGAAGCTGAG
ATGCCACCAGTTAAGAAGACCTCCTTACAGGATCAGATTAAGGAAATTTTGTTAAATGCT
AAACTGATGACCTTCAACGAGCTCCGTTCCCTGGTCCGCAACGATGAGGGTAGTTTTGTG
AGTGAGAGCGCCCTCCTCGCGGCTTTGGGCGGCGTCGCGTGCTGTGTCCGCGGCCTCTGG
ACCGCGCGCTCGCAGCAGATGTACACTCGACCAGCCCCCGCGCCGCCTAGACTGATGTGC
GCGGCCAGGGATCACGTGCTCTACTTATTCACGCAGCACTCGTACGTGGATCGTCGGAAA
ATAGCGGCGGCTGTACGTCTACCGGCTCAGGAAGTATTGGAAATACTTCGCTCCGTCGCT
AAGTTGAATCCACAGACTGGATGGGAACTTCTCTTGCCACCGGATTCAGCATTCGAAGCC
AAGTATCCGGAGGTGATTCAGAGGCAGAACCTCTATTGGGAGGCCTGCCAGCGGCAGTTC
AACGAGATGCTGATAGGTGAAAACCTTCCAAAGCGGCAAAGAAAAAAGTCCCAAAGGGAT
TCAATAAGTTCGGATTCAATGCTGAGCCCCAGACCGAGAAATTACAGTGTTAGTGAGGAT
GATGATAGGAAAAGGAAGATCAAAATGGCCTCAGGTTCTAAAAGGACTAGAAATATGAGT
TCAAGTAGTGCCCAGGACGCAACGTGA
Protein sequence:
MDEEDPVVQEIPVYLSQALSEHLYIYQYPVRPANRDWKDIKVINASIKPKNQLVRMEIGL
DTYSEKYCPSKGEQIALNTDGPQESKYIKDKEKERSQYFRNGIMDKIVYESSSPCLETKH
YAVAILQDKELHCTPIKGICQLRPSYSYFDKQDKRKIDKSKAENSDDEEKESEPQQVTVK
FSRAETDVAKKAREKSYESISQKIANEPWYDAFWRKLDDDHADLERLKLFSSTTSDGSAL
TLGATEYINTLVPSLTDEAEMPPVKKTSLQDQIKEILLNAKLMTFNELRSLVRNDEGSFV
SESALLAALGGVACCVRGLWTARSQQMYTRPAPAPPRLMCAARDHVLYLFTQHSYVDRRK
IAAAVRLPAQEVLEILRSVAKLNPQTGWELLLPPDSAFEAKYPEVIQRQNLYWEACQRQF
NEMLIGENLPKRQRKKSQRDSISSDSMLSPRPRNYSVSEDDDRKRKIKMASGSKRTRNMS
SSSAQDAT