New model in OGS2.0 | DPOGS204924  |
---|---|
Genomic Position | scaffold1529:- 24503-29282 |
See gene structure | |
CDS Length | 1515 |
Paired RNAseq reads   | 296 |
Single RNAseq reads   | 621 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA011417 (4e-10) |
Best Drosophila hit   | CG3045 (5e-98) |
Best Human hit | tRNA pseudouridine synthase 3 (2e-78) |
Best NR hit (blastp)   | PREDICTED: similar to pseudouridylate synthase [Nasonia vitripennis] (4e-112) |
Best NR hit (blastx)   | PREDICTED: similar to pseudouridylate synthase [Nasonia vitripennis] (1e-108) |
GeneOntology terms    | GO:0004730 pseudouridylate synthase activity GO:0009982 pseudouridine synthase activity GO:0003723 RNA binding GO:0001522 pseudouridine synthesis |
InterPro families    | IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain IPR020103 Pseudouridine synthase, catalytic domain IPR020094 Pseudouridine synthase I, TruA, N-terminal IPR020095 Pseudouridine synthase I, TruA, C-terminal IPR001406 Pseudouridine synthase I, TruA |
Orthology group | MCL14853 |
Nucleotide sequence:
ATGTCGAAACAAATTAATAAATTACCACCAAAACAGAGAAAAACTAAAGGCTTATCTAGA
GAGGAGCTTATGAATATGGATAAAAATGAATTAGTTGATAGAATAATACAGTTGGAAGCT
CACACTACGCAACTTAAAAATATAATAAGCAAAAGTGAACCAGTTACAGAGAATATACAG
GGTTACAATAATCAAAGAAAATTTGATTTCACGAAGTGTACCTTCCGACGGGTTCTGCTA
CATATAATATACTTCGGCTGGGATTACCACGGGCTGGCCGTCCAGGAGGATTCAACGCAC
ACAATTGAGCATTACCTCTTCAATGCCCTCGTCAAGTCATGTCTCATTGAGAGTAGAGAA
CAGTCACAGTACCATCGATGTGGAAGGACAGATAAAGGCGTCAGTGCCTTCGGACAGATA
ATATCTATATCATTACGGAGCAAACTGGAACCGTCTTCAACCGACTACTCATCCGAGATC
CAATACTGCAAGATCCTTAACAGATTGTTTCCGAGGGATATTAAAGCGGTAGCCTGGATG
CCCATCCCTGATGATAGACCAGATTTCAGTGCAAGATTCGACTGTAAGGGCCGGCAGTAC
AAGTACTATTTCCCGAAATCTAATCTCAATATAACCGCTATGAGGGAGGCCTGTCGCCAG
CTCATCGGTTCACACGACTTCCGCCACCTCTGCAAGATGGACGTGGGGAACGGCGTCACT
GAGTTCACAAGGCGTGTCGTATCAGCTGACATTATAGCTCTGGATAAGGATTGCGAACAG
ACAACATCGATGTACGCATTAGTGATAGAAGGTAATGCATTTCTGTGGCATCAGATCAGG
TGTATAATGGGCGTGTTGTTGCTCGTGGGCCAAGGACACGAGAGCCCGGGTATCATAGCC
GAATTACTGGACGTCGAAGCAAATCCACGCAAACCTCAATACAATATGGCTCTGGATTTG
CCGTTGAACCTGTTCTGCTGCAGATATGATGTGAAGAGCCGCTGGGTTTATGACGACGAG
GAGCTCAAATACATCATCACCAACTTACAGGCGGACTGGACCTTGTATAATGTCAAATCC
ACCATGATAAAAGATGCTCTGGAACATCTGGAAGGTGTCCTATATGACTTGAGCAAGGAG
GGGAAAAAGTGTGACAGAGACGGAGAATATAACGACGTGGGAAGGAGAGAGATGCAAGAT
AAGGAAGATGTAGCGTTAGAGGGAGACCAAGATAAAATATGTGACATAGACAGAAATTTA
GAAGAGTTGGGAGAGAAAGAGAAAGAAGATGATAACAATAAGTGCGAGAGAGACAGGGGA
TTAAAAGAGTTGGAAGGGAAAGAGACGGGAGATAGAATAATATCGCACGCAGAATGCCTG
CTACAAGGAGTCAAACCAAAAATATACACACCGCTGTTGAAAAGACAAACCTGCTCGAGT
CTGCAGGAACGATTGCAATACTACAGGAAGAAAAGGAAAGTGGAGAGCGGTTCTGATGAT
GAAGAAATAAAATAA
Protein sequence:
MSKQINKLPPKQRKTKGLSREELMNMDKNELVDRIIQLEAHTTQLKNIISKSEPVTENIQ
GYNNQRKFDFTKCTFRRVLLHIIYFGWDYHGLAVQEDSTHTIEHYLFNALVKSCLIESRE
QSQYHRCGRTDKGVSAFGQIISISLRSKLEPSSTDYSSEIQYCKILNRLFPRDIKAVAWM
PIPDDRPDFSARFDCKGRQYKYYFPKSNLNITAMREACRQLIGSHDFRHLCKMDVGNGVT
EFTRRVVSADIIALDKDCEQTTSMYALVIEGNAFLWHQIRCIMGVLLLVGQGHESPGIIA
ELLDVEANPRKPQYNMALDLPLNLFCCRYDVKSRWVYDDEELKYIITNLQADWTLYNVKS
TMIKDALEHLEGVLYDLSKEGKKCDRDGEYNDVGRREMQDKEDVALEGDQDKICDIDRNL
EELGEKEKEDDNNKCERDRGLKELEGKETGDRIISHAECLLQGVKPKIYTPLLKRQTCSS
LQERLQYYRKKRKVESGSDDEEIK