New model in OGS2.0 | DPOGS210654  |
---|---|
Genomic Position | scaffold1872:+ 13104-19010 |
See gene structure | |
CDS Length | 1842 |
Paired RNAseq reads   | 934 |
Single RNAseq reads   | 2227 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA001799 (0.0) |
Best Drosophila hit   | abstrakt (0.0) |
Best Human hit | probable ATP-dependent RNA helicase DDX41 (0.0) |
Best NR hit (blastp)   | PREDICTED: similar to ATP-dependent RNA helicase abstrakt (DEAD box protein abstrakt) isoform 1 [Apis mellifera] (0.0) |
Best NR hit (blastx)   | PREDICTED: similar to ATP-dependent RNA helicase abstrakt (DEAD box protein abstrakt) isoform 1 [Apis mellifera] (0.0) |
GeneOntology terms    | GO:0008026 ATP-dependent helicase activity GO:0004004 ATP-dependent RNA helicase activity GO:0004386 helicase activity GO:0030010 establishment of cell polarity GO:0007399 nervous system development GO:0005634 nucleus GO:0009653 anatomical structure morphogenesis GO:0006915 apoptosis GO:0003676 nucleic acid binding GO:0005524 ATP binding GO:0008270 zinc ion binding GO:0000398 nuclear mRNA splicing, via spliceosome GO:0071011 precatalytic spliceosome GO:0071013 catalytic step 2 spliceosome |
InterPro families    | IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal IPR001650 Helicase, C-terminal IPR014001 DEAD-like helicase IPR014014 RNA helicase, DEAD-box type, Q motif |
Orthology group | MCL14334 |
Nucleotide sequence:
ATGTCGGAACCTCAAGTGAAACGATATAGAAGAGAAGAGAAATCGTCAGAATCTGAAGAA
GATATAGATAATTACGAGCCATACGTGCCTGTGAAAGATAGGAAAAAGCAGAAATTGTTG
GTGTTGGGTCGCCTTGGCCAGTTGGCTGCTGAGGCTGTAGCTGAAACCAAGAGCTCCAGC
GAGAACGACCCAGAAGACGAGGGATCACAGGAAGAATGGGGCAGACGTTACAATGTGTCA
TTGCTGGATCAACACAGTGAACTGAAGAGGTTGGCGGAGGCGAGGGCCCTCTCTGCAGCG
GAGAGACAGGCTAAGGAGGAAGAACATATACTTGATAGTGTAGCACAGAGCAAGGCTTTG
ATGGGAGTCGCTGAATTGGCTAAAGGTATTCAATACTCGGAACCTATAAAGACGTCGTGG
AAACCTCCTGGCTGTATCAGCTCCTTACCTCCAGAGCGTCACGAGAGGGTGAGGAGGGAG
CTGAGGATACAGGTGGAGGGTGAAAACGTCCCTCCACCTATAAGGACTTTCAGACATATG
AAATTTCCCAAAGGTATTCTCCAAGGTCTGGAGGCGAAGGGCATAAAGAAGCCCACGCCC
ATCCAAGTTCAAGGTATCCCAGCGGTTCTGAGCGGTCGTGACATGATCGGTATAGCCTTC
ACCGGCTCCGGGAAGACGCTGGTCTTCACGCTGCCCATCATCATGATGTGTCTGGAACAG
GAGATAGAGATGCCGTTCATCAGAAACGAAGGTCCCTACGGCCTCATAATATGCCCGTCC
AGGGAACTCGCCAAGCAGACCCATGATATCATAATGCATTTCGTTAAACATCTCAAAATG
GCGGGACATCCGGAGATAAGGAGCTGTCTGGCGATCGGTGGTGTGTCCGTCTCCGAGTGC
ATGGAGGTGGTGCAGCGAGGAGTTCACATCATGGTGGCTACACCTGGAAGATTAATGGAC
ATGCTGGATAAGAAGATGGTCCGACTGAACGTGTGCCGCTACCTGTGTATGGACGAAGCT
GATCGGATGATAGACATGGGCTTTGAAGAGGACGTGCGGACCATCTTCTCCTACTTCGCC
GGGCAGCGACAGACTTTACTGTTCAGCGCCACCATGCCCAAGAAGATACAGAACTTCGCC
AGGTCAGCGTTGGTCCAACCGGTGACGTTGAACGTGGGTCGCGCCGGGGCCGCGGCGCTC
GCGGTCCGCCAGGAGCTGGAGCCCGTGAAGGCCGAGGCGAGGACGGTCCACCTGCTGCAG
TGTCTCCAGAAAACGCCTCCTCCCGTCCTAGTGTTCGCTGAACGGAAACAGCACGTGGAC
GCTATACATGAGTACCTGCTGCTCAAGGGGGTGGAGGCCGTGGCGATACACGGCGGCAAG
GACCAGGAGGAGAGGTCCCGGGCCGTGGAGGCCTTCAGGAGGGGCGAGAAGGACGTGCTC
GTGGCTACCGATGTTGCCAGTAAAGGTCTCGACTTCGAGAACATCCAGCACGTGATCAAC
TACGACATGCCGGAGGATATCGAAAACTACGTCCACAGGATAGGTCGTACTGGGCGGGCG
GGGACACAGGGCGTAGCGAGCACATTACTAGGGCGGGCGGCGGATTCTAGCGTTCTACGA
GATTTGGCCCATTTACTGGTCGAAGCTGGGCAAAAAGTCCCGCAATTTCTTCTAGAGATG
ATCGGTGAGGACGGGCCCCTGTCCGGGGGACCTGGCTGCGCGTACTGCGGGGGCCTGGGA
CATAGGATCACTGAGTGCCCCAAGCTAGAGGCAGTCCAGAACAAGCAGGCCTCCAACATC
GGCAGGAGGGACTACCTCGCCAACACAGCAGCAGACTATTGA
Protein sequence:
MSEPQVKRYRREEKSSESEEDIDNYEPYVPVKDRKKQKLLVLGRLGQLAAEAVAETKSSS
ENDPEDEGSQEEWGRRYNVSLLDQHSELKRLAEARALSAAERQAKEEEHILDSVAQSKAL
MGVAELAKGIQYSEPIKTSWKPPGCISSLPPERHERVRRELRIQVEGENVPPPIRTFRHM
KFPKGILQGLEAKGIKKPTPIQVQGIPAVLSGRDMIGIAFTGSGKTLVFTLPIIMMCLEQ
EIEMPFIRNEGPYGLIICPSRELAKQTHDIIMHFVKHLKMAGHPEIRSCLAIGGVSVSEC
MEVVQRGVHIMVATPGRLMDMLDKKMVRLNVCRYLCMDEADRMIDMGFEEDVRTIFSYFA
GQRQTLLFSATMPKKIQNFARSALVQPVTLNVGRAGAAALAVRQELEPVKAEARTVHLLQ
CLQKTPPPVLVFAERKQHVDAIHEYLLLKGVEAVAIHGGKDQEERSRAVEAFRRGEKDVL
VATDVASKGLDFENIQHVINYDMPEDIENYVHRIGRTGRAGTQGVASTLLGRAADSSVLR
DLAHLLVEAGQKVPQFLLEMIGEDGPLSGGPGCAYCGGLGHRITECPKLEAVQNKQASNI
GRRDYLANTAADY