| New model in OGS2.0 | DPOGS206444 |
|---|---|
| Genomic Position | scaffold901:- 63600-68156 |
| See gene structure | |
| CDS Length | 1797 |
| Paired RNAseq reads | 1555 |
| Single RNAseq reads | 3834 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA005448 (0.0) |
| Best Drosophila hit | replication protein A 70 (3e-151) |
| Best Human hit | replication protein A 70 kDa DNA-binding subunit (5e-131) |
| Best NR hit (blastp) | replication protein A1 [Bombyx mori] (0.0) |
| Best NR hit (blastx) | replication protein A1 [Bombyx mori] (0.0) |
| GeneOntology terms | GO:0003697 single-stranded DNA binding GO:0006261 DNA-dependent DNA replication GO:0005662 DNA replication factor A complex GO:0005634 nucleus GO:0007052 mitotic spindle organization GO:0005875 microtubule associated complex |
| InterPro families | IPR013955 Replication factor A, C-terminal IPR007199 Replication factor-A protein 1, N-terminal IPR004365 Nucleic acid binding, OB-fold, tRNA/helicase-type IPR016027 Nucleic acid-binding, OB-fold-like IPR012340 Nucleic acid-binding, OB-fold IPR004591 Replication factor-a protein 1 Rpa1 |
| Orthology group | MCL12542 |
Nucleotide sequence:
ATGTCATATTCACTTTCGGAAGGTGCTGTGGAGATAATAATGAGTGGAGGCGAGTATGAT
GGCCCTGTAATACAAGTACTTGGACACAAAAAGATTCAAAGTAGAGGAGAAGATAGAATT
CGCCTTATTGTTTCTGATGGAAAACATTCCCATAGCTTAGCCCTGCTCAACTCCCAGCTT
AATAATAAAGTATTCAGTGGAGAGCTGTCAAACTATTCTGTAATAAAAGTAGATAAATAT
TTTATTTCCTCTGTTCAAAAAAAGGAAGAGAAGAGAGTTATGGTGATACTCAATTTGACT
ATCATCGCTCCAGGAGCAGAAGTTGGAAAGAAACTCGGTGACCCTATACAGTGGTCGGAA
GATATGACATCACCGTCATATGCAAGCACCACTAAAGCGGAACCAAAACCAGTTCCTACA
CCCATGAGCAATTTGTCAAAAACAACTGCTGGAATCAACTTGAATTCAAGTGTACTGAGT
TCACAAATGACTCATCCTATTGCAAGTTTAAGCCCATATCAGAATAAGTGGGTTATTAAA
GCAAGAGTAATGAACAAAACAGCCATTCGTACTTGGAGCAATGCTAAGGGTGAGGGCAAA
CTCTTCAGCATGGACCTTTGTGATGAGAGTGGTGAAATCAGAGCCACAGCTTTCAAAAAT
GAGTGTGATAAATTCTATGATATGATACAGATTGATAAGGTATACTACATCAGCCGCTGT
CAATTGAAAACAGCAAACAAACAGTACACAACACTGAAGAACGATTATGAGATGACATTC
ACAGCTGACACGGTTGTATCAGAATGTATGGAGGAAAGTAACTCAGTGCCATCCATAAAG
TACGACTTTATGCCCATCAGTGATATTGCTGACAAGGGTCCCGATACAATTCTGGATGTG
ATAGGAGTTTGTAAATCCGCATCAGATATTCAGGAGCTTACAGCCAAAAGCACAGGGAAG
CTGCTAAAAAAACGAGAGGCCACATTAGTGGATTCGTCTGGAGGGGCGATCACTTTAACA
CTTTGGGGAGCTGAGGCTGAAAAATTTGATGGCAGCAGCAATCCTGTTGTTGCTGTGAAG
GGCGCTCGCCTGGCGGAGTTCAACGGCAGCAAGTCCCTGTCGTGCCTCGCCAGTACTATA
GTGAGGGTGCAGCCGGATGTGGAAGAGGCACACCGTCTACGAGGCTGGTATGATAATGGA
GGGGATTCCATGGCCATGGTACATATATCAGCCAGAGTCGGTCAAGGCGGTGGGAACGCT
GAATGGATGACATTCGCGGAAGCCGAAGAACGGAGACTCGGCACTGGCGATAAGGCCGAC
TACTTCAGTCTGTTGGGAGTTTTGACCTTCACGTTCGCGGATAACGCTGTGTACAAAGCC
TGTCCGCAGGAACAGTGCAACAAGAAACTCGTAGACCAGCAGAACGGGCTCTACAGATGT
GAGAAGTGCAATCGAGAGTATCCCAACTATAAATACAGATTGCTGCTAGGAGCTACAGTG
TCCGACCCTACGGGCGACCAGCGAGTGACGGCCTTCAACGAGTCGGCGGAGGTGATGCTC
GGCCGCAGCGCGGAAGAGGTCGGCCGGCTCTCAGACTACGACAAGGCGGAGTACGGCCAG
CTGCTCGACCACGTGAAGTTCAAGACGTTCGTCTTCAAGTTCAGGACCAAGATTGAGACG
TACAGCGACGAAGCCAAGCTAAAGACAGTGGTAATGAGCGCCCAGCCGGTCGACTACAGA
GACGCTAACGCCAGACTCGTCAAGAGCATCAAGGCTTTGAGCGGTGTCGAAGTTTAA
Protein sequence:
MSYSLSEGAVEIIMSGGEYDGPVIQVLGHKKIQSRGEDRIRLIVSDGKHSHSLALLNSQL
NNKVFSGELSNYSVIKVDKYFISSVQKKEEKRVMVILNLTIIAPGAEVGKKLGDPIQWSE
DMTSPSYASTTKAEPKPVPTPMSNLSKTTAGINLNSSVLSSQMTHPIASLSPYQNKWVIK
ARVMNKTAIRTWSNAKGEGKLFSMDLCDESGEIRATAFKNECDKFYDMIQIDKVYYISRC
QLKTANKQYTTLKNDYEMTFTADTVVSECMEESNSVPSIKYDFMPISDIADKGPDTILDV
IGVCKSASDIQELTAKSTGKLLKKREATLVDSSGGAITLTLWGAEAEKFDGSSNPVVAVK
GARLAEFNGSKSLSCLASTIVRVQPDVEEAHRLRGWYDNGGDSMAMVHISARVGQGGGNA
EWMTFAEAEERRLGTGDKADYFSLLGVLTFTFADNAVYKACPQEQCNKKLVDQQNGLYRC
EKCNREYPNYKYRLLLGATVSDPTGDQRVTAFNESAEVMLGRSAEEVGRLSDYDKAEYGQ
LLDHVKFKTFVFKFRTKIETYSDEAKLKTVVMSAQPVDYRDANARLVKSIKALSGVEV