New model in OGS2.0 | DPOGS206445  |
---|---|
Genomic Position | scaffold901:- 36426-48200 |
See gene structure | |
CDS Length | 3774 |
Paired RNAseq reads   | 1120 |
Single RNAseq reads   | 2487 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA005449 (2e-103) |
Best Drosophila hit   | rad50 (1e-130) |
Best Human hit | DNA repair protein RAD50 (6e-134) |
Best NR hit (blastp)   | PREDICTED: RAD50 homolog (S. cerevisiae) [Taeniopygia guttata] (2e-166) |
Best NR hit (blastx)   | DNA repair protein RAD50, putative [Pediculus humanus corporis] (8e-180) |
GeneOntology terms    | GO:0016787 hydrolase activity GO:0007126 meiosis GO:0006281 DNA repair GO:0005634 nucleus GO:0000781 chromosome, telomeric region GO:0000166 nucleotide binding GO:0006974 response to DNA damage stimulus GO:0046872 metal ion binding GO:0005694 chromosome GO:0007049 cell cycle GO:0005524 ATP binding GO:0004518 nuclease activity GO:0030870 Mre11 complex GO:0008270 zinc ion binding GO:0045120 pronucleus GO:0000790 nuclear chromatin GO:0000794 condensed nuclear chromosome GO:0005654 nucleoplasm GO:0016234 inclusion body GO:0048471 perinuclear region of cytoplasm GO:0051291 protein heterooligomerization |
InterPro families    | IPR007517 Rad50 zinc hook IPR009053 Prefoldin IPR013134 Zinc hook, Rad50 IPR004584 Recombination/repair protein Rad50 |
Orthology group | MCL11113 |
Nucleotide sequence:
ATGGCGGGAATCAAATCATTAGCAGTCAGAGGGATTCGAAGTTTTGGACCTGAAGAATGT
GATGAACAGCGTATTACATTTGAGAAGCCCTTAACATTAATTTTGGGTCAAAATGGTTGT
GGTAAAACAACAATTATTGAATGTTTGCGATATGCTATCACAGGGCAAATGCCTCCCGGT
AGTCGCTATGAGTGTTTCGTTCATGATACAAAGGTGAATAGATCAGTAGAAGTCATGGCT
CAAGTAAAATTAAAGATTGTAAATGCAAAGGATAAATTATTGGAGGTTTCAAGGTCTATG
AAGGTTACAGCGGTTAAAAACAAAAAGCCTAAATTTCAGACCTTAGATTCATTTCTTTCA
GTGGATGATGGAAGTGGAAAAACAAAGGACATTTCATCTAGATGTGCAGACTTAGACTTT
GTTATGCATGAGGAACTAGGTGTATCAAAAGCCATATTAAATTCTGTAATATTCTGCCAT
CAAGAGGACTCTAGTTGGCCATTGGATGAAGGGAAGAAGGTGAAAGAAAGATTTGATGAA
ATCTTTGATGCTGATAAGTACAGTGATTGTTTTGATCGCCTCCGAAAGATTCGGAAGGAG
TACGAGCATGAAATTAAATCTCTTGGTCAGCAAGTTTCATATTGGACTGAGAAAAAAGAA
GATCTTGATAAGAAAAAATTAGATCTGGTTAACACTAAAACTAGAATGTCTGAAGCTGAA
GAGAAAATTTTGGAACTCAGCACTGAATTGAGACCAATATCAGAGAAACTCAACGCCATT
GAAACCTTGCAAAAAAACCTAGTATCATTTGAATCGGCCAGAGAGAAAATTAAAAATAGA
TTAGAACACCAACAAGATTCTGTGAAGGAATTGATGAAATCCATTGATAAATTGTATGAA
GGTACAACTGAAGAACTGCATGAAAGATACACAAACTATGGTGCCACCATAGAGGCGAAA
CACACAGAACTTGATAAATCATACAAACAAAACTTTTCGTTCAATAAAGAGGAGGAGCGT
ATTGCAAATGAAAAGACTAACAATGAAGTTAAATTCAATAAATTGATTCTTTTGGAGAGT
CAAAACCAAGAAAAGATCGATAGAAGGAACAATATGGTATTGGATACAGCCAAGCTTGCT
GATGTGGAAGTCCAAAAAATAGAAACAGATGGTGAAGCTGATCAGTGTAAAGCTGCTGTG
ATGGAAAAAATCAAAGATTTAATGAGAAAATTGGAACAACACAAGTTAGATGCCGACAAG
GCAGAGAAAGAATATCAAAAACATGTCGATGACAGTAGAGATGCACTTTCCCGCCACAAA
CAAAAAATATCAAACAAAGAAACAGAAATACAAACAGTGAAGAAAGAAATAATGAAGATG
GGGCAGCAAATAACCGACGCTAATAAATCTAAACAGAGATTAGAAAAATTGGACGCAAAA
TTAAAAACCGCTGAGGATACAATATTGAAAGAAAAGGATATGATCGAGGAATCTTTGAAA
CAGAAAGAGAAGCAACTTAATGTACTGAAGAACAAACATCGCTCTGCCATCACCGAGCTG
TTGGGGAAAATGATTGAAAACAATTTTGCAATATCTATCAATCAGTTTGAATGTCAAACG
AGGACCGAGCTGGAAACCATTAAGAAGAATATATCCGAGAAACAAAATGAGATAACTCGT
GTGGAGACGGATCGCGATCACATCAATCGGCAGCTCCGCGAACGACGCGAGGAACTTTCC
GCCGCTGAAGACCGGATGTATCGCGAGTGTGGAGCGCAGACTTACGACAACACACTCGCT
AAGATCACAGCCACCGTAGACAAGCTACAGGATGAACAAAACGTACTGCAGTCCTCAATG
TTCATTATAACGAAATACAAAGGTCAAATAAAGGACAATAACTGCTGCCCCTTATGCAGC
CGCGGCTTTGATAATGAAGATGAGGTGAATGACCTCATATCCCAACTAACAACTCAAGTG
ATGAACGTGCCGGCTAAACTAGAGAAGGTAACAGAGGAGTTGCAGAGGACTTCCGCTAAG
AAAGATAACTTGCTAAGTATGAGGTCTTTGAATGAGAGGATTGTGGTCTTGAAGGAAAAA
GATATTCCGGACTTGGAGAAACGATTAGTTGAGGCGGATAAGGTGATAGCTAGTTTAACA
GAATCAGTTGATGACTTGACAATGCTCTCGAAGGAGCCAGAACAGAAAATGTCAACTTTG
CGTCAGATACAGGGAGATATGCCACTGTTGGATAAATTTACCAACGAAATTAGAAGTAGT
AAGAAAGACCTCGAATCTGTAAAAGCAAAATGTGCCGATTTTGAGTGCGATATTTCTTTG
GACACCGCTACCGTGAAACAAACTGATTTGAGACAGAAGATCGGGATTTTGAAGACCAAG
ATCAAAAGTAACCAAACGAAATTAAACGAACACACCAAGAAGATACAAAAGCAAGCAGAA
GAGAAGAATAAACTTAAAGAAGAACTTCTTAATATACAGAAAATGGTTCAAGAATTGTAC
AATTTACAAGAGACCCTAAAGCAAATGGAATCTAATAAAGAAAAATATTCGACGGAATTA
AAAGAACTGGAAAATTCAACAGAAAAACTGGAAATGGAACTGAAAGAGAAAGAAAAGGCT
AAAAATAATGCCGTAACGAAAAATAGGCATGAGATTCAAGAAGCGAGTACATATTTAACA
AGAGTAAGCAACGCCTTTGATAAGATAAAAGCAATAGACTCTGAGATCAAGCAACACAAA
GATAGGAACATCCAAAAAGAAATGGATCAGATAAAAGAAGCCAACGACAGGCTGAACTGT
CGCCACAAACAGATCATTAATGACAGAGACACACTCACTAAGAAAATTGACAGTTTGAAA
GATGAAATTGCGAAACAGGAGATATACAAACGTACATTAGAAGACAATATAAAGCTACGA
AAAGCGGAAACGGAAATAGAATCCTGTAATAAAGAGCTCCTTGAAATAAACGATAAGTTA
AAAGGTGTGAACACAGACATGATCTCAGAAAAGGAACCGCTGATTATGAAACAAACTAAG
ATATTTAGAGAGAAAGCGCAAACAGAGGGACAATTGGAAGAATTGAAGAAAGTTTACAAA
CAAAATCAATTGGAACTTAAAAAAGCTCAAAATCAAGAGGTTGAAAAGAAATACAAAGAG
AAACTCTATGAATTACACGTTACGAAAGCTATAGATGCAGATATTCGAGATTATTCTATA
GCCTTGGATAAATGCCTTATGGAGTTCCATAAGGAGAAAATGGAAAATATCAATCTCATT
ATAAGAGAACTTTGGAGGAAAATATACAGAGGCAATGATATAGACTATATAGAGATAAAG
ACAGAGGGAAGTATGTCAGCAGAATCTGAACGCCGAAAATATGATTACAGAGTTGTTCAA
TGTAAGAACGGCGTGGAGATTGATATGCGTGGAAGATGCAGTGCTGGTCAGAAAGTATTG
GCATGTCTTATTATAAGACTTGCGCTGGCAGAAACGTTTAGTTCAAGGTTTGGTATACTA
GCTTTAGATGAACCTACAACGAATTTAGACCAGGAAAATGTAGTAAGTCTGTGTTCTGCC
CTCGGTGATATAGTACAAGAAAGGATGTCGCAGAGAAATTTCATGTTCATTATCATAACT
CATGACAGAGAATTTATTGATACCTTGGGCAATATTGATAAGGTAACTCACTACTATGAA
GTGTCCAGAAATGAAGAAGGTAAATCAAGAGTTAAGAAGATTAGATTCACATAG
Protein sequence:
MAGIKSLAVRGIRSFGPEECDEQRITFEKPLTLILGQNGCGKTTIIECLRYAITGQMPPG
SRYECFVHDTKVNRSVEVMAQVKLKIVNAKDKLLEVSRSMKVTAVKNKKPKFQTLDSFLS
VDDGSGKTKDISSRCADLDFVMHEELGVSKAILNSVIFCHQEDSSWPLDEGKKVKERFDE
IFDADKYSDCFDRLRKIRKEYEHEIKSLGQQVSYWTEKKEDLDKKKLDLVNTKTRMSEAE
EKILELSTELRPISEKLNAIETLQKNLVSFESAREKIKNRLEHQQDSVKELMKSIDKLYE
GTTEELHERYTNYGATIEAKHTELDKSYKQNFSFNKEEERIANEKTNNEVKFNKLILLES
QNQEKIDRRNNMVLDTAKLADVEVQKIETDGEADQCKAAVMEKIKDLMRKLEQHKLDADK
AEKEYQKHVDDSRDALSRHKQKISNKETEIQTVKKEIMKMGQQITDANKSKQRLEKLDAK
LKTAEDTILKEKDMIEESLKQKEKQLNVLKNKHRSAITELLGKMIENNFAISINQFECQT
RTELETIKKNISEKQNEITRVETDRDHINRQLRERREELSAAEDRMYRECGAQTYDNTLA
KITATVDKLQDEQNVLQSSMFIITKYKGQIKDNNCCPLCSRGFDNEDEVNDLISQLTTQV
MNVPAKLEKVTEELQRTSAKKDNLLSMRSLNERIVVLKEKDIPDLEKRLVEADKVIASLT
ESVDDLTMLSKEPEQKMSTLRQIQGDMPLLDKFTNEIRSSKKDLESVKAKCADFECDISL
DTATVKQTDLRQKIGILKTKIKSNQTKLNEHTKKIQKQAEEKNKLKEELLNIQKMVQELY
NLQETLKQMESNKEKYSTELKELENSTEKLEMELKEKEKAKNNAVTKNRHEIQEASTYLT
RVSNAFDKIKAIDSEIKQHKDRNIQKEMDQIKEANDRLNCRHKQIINDRDTLTKKIDSLK
DEIAKQEIYKRTLEDNIKLRKAETEIESCNKELLEINDKLKGVNTDMISEKEPLIMKQTK
IFREKAQTEGQLEELKKVYKQNQLELKKAQNQEVEKKYKEKLYELHVTKAIDADIRDYSI
ALDKCLMEFHKEKMENINLIIRELWRKIYRGNDIDYIEIKTEGSMSAESERRKYDYRVVQ
CKNGVEIDMRGRCSAGQKVLACLIIRLALAETFSSRFGILALDEPTTNLDQENVVSLCSA
LGDIVQERMSQRNFMFIIITHDREFIDTLGNIDKVTHYYEVSRNEEGKSRVKKIRFT