DPGLEAN18062 in OGS1.0

New model in OGS2.0DPOGS206445 
Genomic Positionscaffold901:- 36426-48200
See gene structure
CDS Length3774
Paired RNAseq reads  1120
Single RNAseq reads  2487
Migratory profilesQuery via corresponding ESTs
Best Bmobyx hitBGIBMGA005449 (2e-103)
Best Drosophila hit  rad50 (1e-130)
Best Human hitDNA repair protein RAD50 (6e-134)
Best NR hit (blastp)  PREDICTED: RAD50 homolog (S. cerevisiae) [Taeniopygia guttata] (2e-166)
Best NR hit (blastx)  DNA repair protein RAD50, putative [Pediculus humanus corporis] (8e-180)
GeneOntology terms



















  
GO:0016787 hydrolase activity
GO:0007126 meiosis
GO:0006281 DNA repair
GO:0005634 nucleus
GO:0000781 chromosome, telomeric region
GO:0000166 nucleotide binding
GO:0006974 response to DNA damage stimulus
GO:0046872 metal ion binding
GO:0005694 chromosome
GO:0007049 cell cycle
GO:0005524 ATP binding
GO:0004518 nuclease activity
GO:0030870 Mre11 complex
GO:0008270 zinc ion binding
GO:0045120 pronucleus
GO:0000790 nuclear chromatin
GO:0000794 condensed nuclear chromosome
GO:0005654 nucleoplasm
GO:0016234 inclusion body
GO:0048471 perinuclear region of cytoplasm
GO:0051291 protein heterooligomerization
InterPro families


  
IPR007517 Rad50 zinc hook
IPR009053 Prefoldin
IPR013134 Zinc hook, Rad50
IPR004584 Recombination/repair protein Rad50
Orthology groupMCL11113

Nucleotide sequence:

ATGGCGGGAATCAAATCATTAGCAGTCAGAGGGATTCGAAGTTTTGGACCTGAAGAATGT
GATGAACAGCGTATTACATTTGAGAAGCCCTTAACATTAATTTTGGGTCAAAATGGTTGT
GGTAAAACAACAATTATTGAATGTTTGCGATATGCTATCACAGGGCAAATGCCTCCCGGT
AGTCGCTATGAGTGTTTCGTTCATGATACAAAGGTGAATAGATCAGTAGAAGTCATGGCT
CAAGTAAAATTAAAGATTGTAAATGCAAAGGATAAATTATTGGAGGTTTCAAGGTCTATG
AAGGTTACAGCGGTTAAAAACAAAAAGCCTAAATTTCAGACCTTAGATTCATTTCTTTCA
GTGGATGATGGAAGTGGAAAAACAAAGGACATTTCATCTAGATGTGCAGACTTAGACTTT
GTTATGCATGAGGAACTAGGTGTATCAAAAGCCATATTAAATTCTGTAATATTCTGCCAT
CAAGAGGACTCTAGTTGGCCATTGGATGAAGGGAAGAAGGTGAAAGAAAGATTTGATGAA
ATCTTTGATGCTGATAAGTACAGTGATTGTTTTGATCGCCTCCGAAAGATTCGGAAGGAG
TACGAGCATGAAATTAAATCTCTTGGTCAGCAAGTTTCATATTGGACTGAGAAAAAAGAA
GATCTTGATAAGAAAAAATTAGATCTGGTTAACACTAAAACTAGAATGTCTGAAGCTGAA
GAGAAAATTTTGGAACTCAGCACTGAATTGAGACCAATATCAGAGAAACTCAACGCCATT
GAAACCTTGCAAAAAAACCTAGTATCATTTGAATCGGCCAGAGAGAAAATTAAAAATAGA
TTAGAACACCAACAAGATTCTGTGAAGGAATTGATGAAATCCATTGATAAATTGTATGAA
GGTACAACTGAAGAACTGCATGAAAGATACACAAACTATGGTGCCACCATAGAGGCGAAA
CACACAGAACTTGATAAATCATACAAACAAAACTTTTCGTTCAATAAAGAGGAGGAGCGT
ATTGCAAATGAAAAGACTAACAATGAAGTTAAATTCAATAAATTGATTCTTTTGGAGAGT
CAAAACCAAGAAAAGATCGATAGAAGGAACAATATGGTATTGGATACAGCCAAGCTTGCT
GATGTGGAAGTCCAAAAAATAGAAACAGATGGTGAAGCTGATCAGTGTAAAGCTGCTGTG
ATGGAAAAAATCAAAGATTTAATGAGAAAATTGGAACAACACAAGTTAGATGCCGACAAG
GCAGAGAAAGAATATCAAAAACATGTCGATGACAGTAGAGATGCACTTTCCCGCCACAAA
CAAAAAATATCAAACAAAGAAACAGAAATACAAACAGTGAAGAAAGAAATAATGAAGATG
GGGCAGCAAATAACCGACGCTAATAAATCTAAACAGAGATTAGAAAAATTGGACGCAAAA
TTAAAAACCGCTGAGGATACAATATTGAAAGAAAAGGATATGATCGAGGAATCTTTGAAA
CAGAAAGAGAAGCAACTTAATGTACTGAAGAACAAACATCGCTCTGCCATCACCGAGCTG
TTGGGGAAAATGATTGAAAACAATTTTGCAATATCTATCAATCAGTTTGAATGTCAAACG
AGGACCGAGCTGGAAACCATTAAGAAGAATATATCCGAGAAACAAAATGAGATAACTCGT
GTGGAGACGGATCGCGATCACATCAATCGGCAGCTCCGCGAACGACGCGAGGAACTTTCC
GCCGCTGAAGACCGGATGTATCGCGAGTGTGGAGCGCAGACTTACGACAACACACTCGCT
AAGATCACAGCCACCGTAGACAAGCTACAGGATGAACAAAACGTACTGCAGTCCTCAATG
TTCATTATAACGAAATACAAAGGTCAAATAAAGGACAATAACTGCTGCCCCTTATGCAGC
CGCGGCTTTGATAATGAAGATGAGGTGAATGACCTCATATCCCAACTAACAACTCAAGTG
ATGAACGTGCCGGCTAAACTAGAGAAGGTAACAGAGGAGTTGCAGAGGACTTCCGCTAAG
AAAGATAACTTGCTAAGTATGAGGTCTTTGAATGAGAGGATTGTGGTCTTGAAGGAAAAA
GATATTCCGGACTTGGAGAAACGATTAGTTGAGGCGGATAAGGTGATAGCTAGTTTAACA
GAATCAGTTGATGACTTGACAATGCTCTCGAAGGAGCCAGAACAGAAAATGTCAACTTTG
CGTCAGATACAGGGAGATATGCCACTGTTGGATAAATTTACCAACGAAATTAGAAGTAGT
AAGAAAGACCTCGAATCTGTAAAAGCAAAATGTGCCGATTTTGAGTGCGATATTTCTTTG
GACACCGCTACCGTGAAACAAACTGATTTGAGACAGAAGATCGGGATTTTGAAGACCAAG
ATCAAAAGTAACCAAACGAAATTAAACGAACACACCAAGAAGATACAAAAGCAAGCAGAA
GAGAAGAATAAACTTAAAGAAGAACTTCTTAATATACAGAAAATGGTTCAAGAATTGTAC
AATTTACAAGAGACCCTAAAGCAAATGGAATCTAATAAAGAAAAATATTCGACGGAATTA
AAAGAACTGGAAAATTCAACAGAAAAACTGGAAATGGAACTGAAAGAGAAAGAAAAGGCT
AAAAATAATGCCGTAACGAAAAATAGGCATGAGATTCAAGAAGCGAGTACATATTTAACA
AGAGTAAGCAACGCCTTTGATAAGATAAAAGCAATAGACTCTGAGATCAAGCAACACAAA
GATAGGAACATCCAAAAAGAAATGGATCAGATAAAAGAAGCCAACGACAGGCTGAACTGT
CGCCACAAACAGATCATTAATGACAGAGACACACTCACTAAGAAAATTGACAGTTTGAAA
GATGAAATTGCGAAACAGGAGATATACAAACGTACATTAGAAGACAATATAAAGCTACGA
AAAGCGGAAACGGAAATAGAATCCTGTAATAAAGAGCTCCTTGAAATAAACGATAAGTTA
AAAGGTGTGAACACAGACATGATCTCAGAAAAGGAACCGCTGATTATGAAACAAACTAAG
ATATTTAGAGAGAAAGCGCAAACAGAGGGACAATTGGAAGAATTGAAGAAAGTTTACAAA
CAAAATCAATTGGAACTTAAAAAAGCTCAAAATCAAGAGGTTGAAAAGAAATACAAAGAG
AAACTCTATGAATTACACGTTACGAAAGCTATAGATGCAGATATTCGAGATTATTCTATA
GCCTTGGATAAATGCCTTATGGAGTTCCATAAGGAGAAAATGGAAAATATCAATCTCATT
ATAAGAGAACTTTGGAGGAAAATATACAGAGGCAATGATATAGACTATATAGAGATAAAG
ACAGAGGGAAGTATGTCAGCAGAATCTGAACGCCGAAAATATGATTACAGAGTTGTTCAA
TGTAAGAACGGCGTGGAGATTGATATGCGTGGAAGATGCAGTGCTGGTCAGAAAGTATTG
GCATGTCTTATTATAAGACTTGCGCTGGCAGAAACGTTTAGTTCAAGGTTTGGTATACTA
GCTTTAGATGAACCTACAACGAATTTAGACCAGGAAAATGTAGTAAGTCTGTGTTCTGCC
CTCGGTGATATAGTACAAGAAAGGATGTCGCAGAGAAATTTCATGTTCATTATCATAACT
CATGACAGAGAATTTATTGATACCTTGGGCAATATTGATAAGGTAACTCACTACTATGAA
GTGTCCAGAAATGAAGAAGGTAAATCAAGAGTTAAGAAGATTAGATTCACATAG

Protein sequence:

MAGIKSLAVRGIRSFGPEECDEQRITFEKPLTLILGQNGCGKTTIIECLRYAITGQMPPG
SRYECFVHDTKVNRSVEVMAQVKLKIVNAKDKLLEVSRSMKVTAVKNKKPKFQTLDSFLS
VDDGSGKTKDISSRCADLDFVMHEELGVSKAILNSVIFCHQEDSSWPLDEGKKVKERFDE
IFDADKYSDCFDRLRKIRKEYEHEIKSLGQQVSYWTEKKEDLDKKKLDLVNTKTRMSEAE
EKILELSTELRPISEKLNAIETLQKNLVSFESAREKIKNRLEHQQDSVKELMKSIDKLYE
GTTEELHERYTNYGATIEAKHTELDKSYKQNFSFNKEEERIANEKTNNEVKFNKLILLES
QNQEKIDRRNNMVLDTAKLADVEVQKIETDGEADQCKAAVMEKIKDLMRKLEQHKLDADK
AEKEYQKHVDDSRDALSRHKQKISNKETEIQTVKKEIMKMGQQITDANKSKQRLEKLDAK
LKTAEDTILKEKDMIEESLKQKEKQLNVLKNKHRSAITELLGKMIENNFAISINQFECQT
RTELETIKKNISEKQNEITRVETDRDHINRQLRERREELSAAEDRMYRECGAQTYDNTLA
KITATVDKLQDEQNVLQSSMFIITKYKGQIKDNNCCPLCSRGFDNEDEVNDLISQLTTQV
MNVPAKLEKVTEELQRTSAKKDNLLSMRSLNERIVVLKEKDIPDLEKRLVEADKVIASLT
ESVDDLTMLSKEPEQKMSTLRQIQGDMPLLDKFTNEIRSSKKDLESVKAKCADFECDISL
DTATVKQTDLRQKIGILKTKIKSNQTKLNEHTKKIQKQAEEKNKLKEELLNIQKMVQELY
NLQETLKQMESNKEKYSTELKELENSTEKLEMELKEKEKAKNNAVTKNRHEIQEASTYLT
RVSNAFDKIKAIDSEIKQHKDRNIQKEMDQIKEANDRLNCRHKQIINDRDTLTKKIDSLK
DEIAKQEIYKRTLEDNIKLRKAETEIESCNKELLEINDKLKGVNTDMISEKEPLIMKQTK
IFREKAQTEGQLEELKKVYKQNQLELKKAQNQEVEKKYKEKLYELHVTKAIDADIRDYSI
ALDKCLMEFHKEKMENINLIIRELWRKIYRGNDIDYIEIKTEGSMSAESERRKYDYRVVQ
CKNGVEIDMRGRCSAGQKVLACLIIRLALAETFSSRFGILALDEPTTNLDQENVVSLCSA
LGDIVQERMSQRNFMFIIITHDREFIDTLGNIDKVTHYYEVSRNEEGKSRVKKIRFT