| New model in OGS2.0 | DPOGS206449 |
|---|---|
| Genomic Position | scaffold901:- 1411-5457 |
| See gene structure | |
| CDS Length | 1215 |
| Paired RNAseq reads | 344 |
| Single RNAseq reads | 1134 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA005377 (1e-143) |
| Best Drosophila hit | Ssl1 (3e-116) |
| Best Human hit | general transcription factor IIH subunit 2 (9e-97) |
| Best NR hit (blastp) | TFIIH basal transcription factor complex p44 subunit [Culex quinquefasciatus] (4e-139) |
| Best NR hit (blastx) | TFIIH basal transcription factor complex p44 subunit [Culex quinquefasciatus] (4e-134) |
| GeneOntology terms | GO:0005675 holo TFIIH complex GO:0016251 general RNA polymerase II transcription factor activity GO:0006367 transcription initiation from RNA polymerase II promoter GO:0006281 DNA repair GO:0045449 regulation of transcription GO:0008270 zinc ion binding |
| InterPro families | IPR007198 Ssl1-like IPR004595 TFIIH C1-like, C-terminal IPR002035 von Willebrand factor, type A IPR012170 TFIIH basal transcription factor complex, subunit SSL1 |
| Orthology group | MCL10910 |
Nucleotide sequence:
ATGGCAGATGATGAGCAGGATCCTAAAGAATATAGATGGGAGACGGGTTATGAGAAAACT
TGGGAAGCTATCAAGGAAGATGAAGATGGTTTGGTGGAAGGCCTTGTCGCCGAATTCGCA
CAAAAAGCAGCTCGAAAAGCTATTGCTCCCAAACGTGGGCCGGTTCGTCTTGGTATGATG
AGACATTTGCTGGTGGCAATAGACTGTTCCGAAGCCATGACATCTCAGGACTTAAAGCCT
ACGAGATTTCTTTGCACCTTAAAGCTTCTTGAAAAATTTGTGGAAGAATTTTTTGATCAA
AATCCTTTAAGTCAACTTGGTATAGTTACAATGAAAAATAAAAGGGCTGAAAAAATTACA
GAATTATCAGGAAATGTGAGAAAGCATATCAAAGCTGTTCAAGGTCTGTCAAATCTTGCA
TTAACGGGAGAGCCCTCTCTGCAGAACACTCTGGAGTTAGCAGGAAGAACATTGAGGCCG
TTACCGGGACATGCATCAAGGGAGCTCCTGGTTTTATTTGGTTCACTTACAACATGTGAC
CCAGGAGATATAACTACCACCATACAGACTTTAAAAACGGATGGCATTAGATGTTCCATA
ATTGGTCTTGCAGCGGAGGTCAGGATATGTAAGAAATTGTGCCAAGATACTGGTGGTGAA
TACGGGGTGGTATTAGATGATGTGCATTATCGCTCGTTGCTGTTAGAACAGACCTCCCCT
CCAGCCAGAGCGCGCGCTCTTGACGCAGGTCTTGTTAAAATGGGCTTTCCTCATACACCT
CAACCCTCATCTGACCAGCCCGAGTCAGATCCACCGATAACATTATGCATGTGTCACCTT
GAGGAGGGCGAGGGTGTGGTTGGCGAGGGTCATCTTTGTCCTCAATGTCGCAGCAAGTAC
TGTTCACTGCCAGCACAGTGTCGAACATGTGGACTGACACTCGCGTCAGCACCACATCTA
GCCAGGTCATACCACCATCTATTCCCTGTGGAGCCTTTCGAGGAGTTACCAAATGAGGGT
CAAGCTCAATTCTGTTTTGGCTGCCTCAGATCATTCACGGAAAATGATAAACAGATATAT
CGTTGTCGTCGTTGTACCGAATTCTATTGCTGGGAGTGTGAAGGTGTGGTGTCAAGTACA
CTTCACGTTTGTGGTTCCTGTGCCTCCAGACCGCAGCTCTACCAGAGACTACCAACGGCT
GAAGGGAGAGACTGA
Protein sequence:
MADDEQDPKEYRWETGYEKTWEAIKEDEDGLVEGLVAEFAQKAARKAIAPKRGPVRLGMM
RHLLVAIDCSEAMTSQDLKPTRFLCTLKLLEKFVEEFFDQNPLSQLGIVTMKNKRAEKIT
ELSGNVRKHIKAVQGLSNLALTGEPSLQNTLELAGRTLRPLPGHASRELLVLFGSLTTCD
PGDITTTIQTLKTDGIRCSIIGLAAEVRICKKLCQDTGGEYGVVLDDVHYRSLLLEQTSP
PARARALDAGLVKMGFPHTPQPSSDQPESDPPITLCMCHLEEGEGVVGEGHLCPQCRSKY
CSLPAQCRTCGLTLASAPHLARSYHHLFPVEPFEELPNEGQAQFCFGCLRSFTENDKQIY
RCRRCTEFYCWECEGVVSSTLHVCGSCASRPQLYQRLPTAEGRD