New model in OGS2.0 | DPOGS215996  |
---|---|
Genomic Position | scaffold343:- 61673-68772 |
See gene structure | |
CDS Length | 2967 |
Paired RNAseq reads   | 1147 |
Single RNAseq reads   | 3722 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA000930 (0.0) |
Best Drosophila hit   | imitation SWI, isoform C (0.0) |
Best Human hit | probable global transcription activator SNF2L1 isoform b (0.0) |
Best NR hit (blastp)   | PREDICTED: similar to Imitation SWI CG8625-PA, isoform A isoform 1 [Apis mellifera] (0.0) |
Best NR hit (blastx)   | PREDICTED: similar to Imitation SWI CG8625-PA, isoform A isoform 1 [Apis mellifera] (0.0) |
GeneOntology terms    | GO:0016589 NURF complex GO:0005524 ATP binding GO:0008094 DNA-dependent ATPase activity GO:0016590 ACF complex GO:0006355 regulation of transcription, DNA-dependent GO:0000166 nucleotide binding GO:0016584 nucleosome positioning GO:0006334 nucleosome assembly GO:0008623 chromatin accessibility complex GO:0006333 chromatin assembly or disassembly GO:0016585 chromatin remodeling complex GO:0016251 general RNA polymerase II transcription factor activity GO:0042766 nucleosome mobilization GO:0016887 ATPase activity GO:0006338 chromatin remodeling GO:0035060 brahma complex GO:0003678 DNA helicase activity GO:0005515 protein binding GO:0006350 transcription GO:0005667 transcription factor complex GO:0045941 positive regulation of transcription GO:0003677 DNA binding GO:0031491 nucleosome binding GO:0004386 helicase activity GO:0043044 ATP-dependent chromatin remodeling GO:0035076 ecdysone receptor-mediated signaling pathway GO:0007517 muscle organ development GO:0048813 dendrite morphogenesis GO:0042752 regulation of circadian rhythm GO:0032582 negative regulation of gene-specific transcription GO:0005700 polytene chromosome GO:0031213 RSF complex |
InterPro families    | IPR000330 SNF2-related IPR015195 SLIDE IPR001650 Helicase, C-terminal IPR014001 DEAD-like helicase IPR001005 SANT domain, DNA binding IPR009057 Homeodomain-like IPR017884 SANT, eukarya |
Orthology group | MCL11560 |
Nucleotide sequence:
ATGTCTCAAGCTGAAGAACCTATGGAAGCAGCAGATGCTGGCGATAATTCTAATGGCTCT
TCAAGTGATACACCGTCATCTAGAGGCAAAGAAGGCGATTTTGAAAGCAAAATTGAAACT
GATCGTGCGAAGAGATTCGATTTTTTGTTAAAACAAACGGAAATTTTCTCACATTTCATG
ACAAACACTCCCAAATCTGGAAGTAGTCCTCCTAAACCCAAAGCTGGAAGACCAAGAAAG
ATTAAAGAACCAGAGCCTGAAGCTGGAGACCACCGACATCGCAAAACAGAACAAGAGGAA
GATGAAGAGCTTCTTGCCGAAACAAATACAAAACAGAAAACCATTTTCCGATTTGAATCA
TCACCTCCATATATAAAGAATGGTGAAATGAGAGATTACCAAGTTAGAGGCTTGAATTGG
ATGATATCTCTCTATGAAAATGGTATCAATGGTATCCTAGCCGATGAGATGGGTTTGGGA
AAGACATTACAGACTATATCACTCTTAGGATATATGAAAAATTTCAAAAATGTTCCTGGG
CCTCACATAGTTATTGTTCCAAAATCTACATTGACCAATTGGATGAATGAGTTCAAGAAG
TGGTGTCCATCGCTCCGAGCTGTGTGTCTCATTGGAGATCAAGAGACCAGGAATATATTT
ATAAGGGAGACACTAATGCCTGGAAATTGGGATGTTTGCATCACGTCATACGAAATGATC
ATACGTGAGAAGTCCGTCTTCAAGAAATTTAACTGGAGGTACATGGTCATAGATGAAGCT
CATCGTATCAAGAACGAAAAATCTAAACTGTCAGAACTGCTACGTGAGTTCAAGAGCATG
AACAGACTGCTGTTAACTGGAACACCATTACAGAATAATCTTCATGAGCTCTGGGCTTTA
CTCAACTTTTTGTTGCCCGATGTGTTTAATAGTTCTGATGATTTCGATGCATGGTTCAAT
ACAAATGCCGCACTGGGTGACAATCAGCTCGTGTCTCGATTGCATGCCGTGCTGAGACCG
TTTCTATTGAGACGTCTCAAGGCCGAAGTGGAAAAGAAGCTGAAACCTAAGAAAGAACTT
AAAGTGTACATAGGTTTGAGTAAAATGCAAAGGGAATGGTACACTAAAGTGTTGATGAAG
GATATAGATGTTGTAAACGGCGCTGGTAAAGTAGAGAAGATGAGGTTACAAAATATTCTT
ATGCAGCTGCGTAAGTGTTGCAACCACCCTTACTTGTTCGATGGCGCGGAACCCGGCCCT
CCGTACACCACGGATGAGCATCTAGTATACAACTGTGGAAAACTAGCGATATTGGATAAG
CTGTTGCCTAAATTACAAGAACAAGAATCGAGAGTGCTCATATTCTCACAAATGACGAGA
ATGTTGGATATCTTGGAGGATTATTGTCTTTGGAGGCAATATAAATACTGCCGTCTAGAC
GGCCAAACACCTCATGAAGATAGGAACAGGCAAATCGAGGAATACAATGCTGAAGGCAGC
GAGAAATTTATATTCATGTTGTCAACTCGTGCTGGAGGTCTGGGTATTAATTTGACAACA
GCTGATGTGGTCATTATATATGACTCAGATTGGAACCCACAGATGGACTTGCAAGCCATG
GACAGAGCTCACCGTATAGGGCAAATGAAACAAGTACGTGTATTCCGTCTTATAACTGAG
AACACGGTCGAGGAGAAAATAGTTGAAAGGGCAGAGGTCAAACTGCGTCTGGACAAGCTG
GTTATACAGTCAGGTCGTCTCGTTGATATTAAGAACCAACTTAATAAAGACGAAATGTTA
AACATGATCAGACATGGCGCCAACCACGTCTTTTCATCTAAGGACTCTGAGATCACCGAC
GAAGACATTGATAGTATTCTCGCCAAGGGAGAATCTAAGACTGAGGAACTGAAACAGAAG
TTGGAGAGTCTCGAAGAATCGTCGTTACGATCATTTTCCATGGACACACCCGGAGCAACT
GATTCTGTATATCAATTTGAAGGTGAGGATTACAGAGAAAAACAGAAGATAGTTCCGATC
GGTAATTGGATAGAACCACCTAAAAGAGAACGTAAAGCTAACTACGCGGTTGACGCGTAC
TTCAGAGAGGCACTTCGCGTCTCTGAACCGAAGGCGCCAAAGGTACAGAGCGTAGAGGAC
AGTTGTGAGGGTTTGCACCAGGAGAGGCAAGAGACTCCAACTTCAGACCTTGGCGCCCCC
CGAATTTGTCGCCCTGGGCCATCGCCCCATCACGCCCCCCCCAACGCCGGCACTGATTAT
GTAACGAGTTTCACAAACTGGACAAAACGAGACTTCAATCAATTTATAAAGGCTAATGAA
AAGTATGGAAGAGATGATATAGAAAATATCGCTAAGGATGTTGAAGGGAAGACGCCAGAA
GAGGTCATGGAATACTCAGCAGTTTTTTGGGAAAGATGTCATGAACTTCAAGATATTGAT
AGAATTATGGGTCAAATTGAAAGAGGCGAAGCTAAGATACAGAGGAGGGCGTCGATCAAA
AAAGCTTTAGATGCCAAAATGGCGCGATATAGGGCGCCCTTCCACCAACTTAGAATATCA
TATGGAACAAATAAGGGGAAAAATTATGTAGAAGAAGAGGACAGATTCCTCGTTTGCATG
CTGCATAAATTGGGTTTCGATAAGGAAAATGTCTATGAAGAACTCAGAGCCGCTGTACAC
GCGGCTCCTCAATTCCGTTTCGATTGGTTCCTTAAATCACGTACAGCCGTTGAATTACAA
CGAAGATGCAATACTCTTATAACATTGATCGAGAGAGAAAATCAAGAATTGGAAGAAAAA
GAACGCGCTGAAAAGAAAAAGAAGAGTGGTAACTCTAATCAAAATACCCCAGGAGGTAAT
GCTACGGGTAAAGGTGCCAATTCAGGCAAACGTAAGGCTGAGAACACACCTGACACGACT
CAGAAAAATAAGAAAAAGAAAAAATGA
Protein sequence:
MSQAEEPMEAADAGDNSNGSSSDTPSSRGKEGDFESKIETDRAKRFDFLLKQTEIFSHFM
TNTPKSGSSPPKPKAGRPRKIKEPEPEAGDHRHRKTEQEEDEELLAETNTKQKTIFRFES
SPPYIKNGEMRDYQVRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYMKNFKNVPG
PHIVIVPKSTLTNWMNEFKKWCPSLRAVCLIGDQETRNIFIRETLMPGNWDVCITSYEMI
IREKSVFKKFNWRYMVIDEAHRIKNEKSKLSELLREFKSMNRLLLTGTPLQNNLHELWAL
LNFLLPDVFNSSDDFDAWFNTNAALGDNQLVSRLHAVLRPFLLRRLKAEVEKKLKPKKEL
KVYIGLSKMQREWYTKVLMKDIDVVNGAGKVEKMRLQNILMQLRKCCNHPYLFDGAEPGP
PYTTDEHLVYNCGKLAILDKLLPKLQEQESRVLIFSQMTRMLDILEDYCLWRQYKYCRLD
GQTPHEDRNRQIEEYNAEGSEKFIFMLSTRAGGLGINLTTADVVIIYDSDWNPQMDLQAM
DRAHRIGQMKQVRVFRLITENTVEEKIVERAEVKLRLDKLVIQSGRLVDIKNQLNKDEML
NMIRHGANHVFSSKDSEITDEDIDSILAKGESKTEELKQKLESLEESSLRSFSMDTPGAT
DSVYQFEGEDYREKQKIVPIGNWIEPPKRERKANYAVDAYFREALRVSEPKAPKVQSVED
SCEGLHQERQETPTSDLGAPRICRPGPSPHHAPPNAGTDYVTSFTNWTKRDFNQFIKANE
KYGRDDIENIAKDVEGKTPEEVMEYSAVFWERCHELQDIDRIMGQIERGEAKIQRRASIK
KALDAKMARYRAPFHQLRISYGTNKGKNYVEEEDRFLVCMLHKLGFDKENVYEELRAAVH
AAPQFRFDWFLKSRTAVELQRRCNTLITLIERENQELEEKERAEKKKKSGNSNQNTPGGN
ATGKGANSGKRKAENTPDTTQKNKKKKK