| New model in OGS2.0 | DPOGS205004 |
|---|---|
| Genomic Position | scaffold2341:- 4941-5628 |
| See gene structure | |
| CDS Length | 399 |
| Paired RNAseq reads | 1404 |
| Single RNAseq reads | 3183 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA010234 (2e-45) |
| Best Drosophila hit | RNA polymerase II 18kD subunit (2e-36) |
| Best Human hit | DNA-directed RNA polymerases I, II, and III subunit RPABC2 (2e-31) |
| Best NR hit (blastp) | DNA-directed RNA polymerase subunit 6-like protein [Bombyx mori] (3e-52) |
| Best NR hit (blastx) | DNA-directed RNA polymerase subunit 6-like protein [Bombyx mori] (4e-46) |
| GeneOntology terms | GO:0003899 DNA-directed RNA polymerase activity GO:0006366 transcription from RNA polymerase II promoter GO:0005665 DNA-directed RNA polymerase II, core complex GO:0003677 DNA binding |
| InterPro families | IPR006110 RNA polymerase, subunit omega/K/RPABC2 IPR020708 DNA-directed RNA polymerase, 14-18kDa subunit, conserved site IPR012293 RNA polymerase subunit, RPB6/omega IPR006111 DNA-directed RNA polymerase, subunit K/RPABC2 |
| Orthology group | MCL14756 |
Nucleotide sequence:
ATGGCGGACGAGGAATTCGATGGAGAGGATGGGGGAGGAGATTATGACGACATTGTTGAA
GAAGACAATAACATAGAAGAGGTTGAGGAACAAGAGGAAGATGGTTATAATGTTCAGTGT
TTAGCTCCAGGGCAAGCCGGTGGTGGAGTAGAGAAATCTAAACGGATCACGACTAGATAT
ATGACAAAATATGAAAGGGCAAGAGTATTAGGTACGAGAGCATTGCAAATAGCTATGTGC
GCCCCCGTCATGGTGGAACTGGAAGGTGAAACCGACCCATTACAAATTGCAATGAAGGAA
TTGAAGCAGAGAAAGATTCCCATAATCATCCGAAGATATCTCCCTGACCACTCTTACGAA
GATTGGAGTATAGATGAACTCATTATAATAGATCATTAG
Protein sequence:
MADEEFDGEDGGGDYDDIVEEDNNIEEVEEQEEDGYNVQCLAPGQAGGGVEKSKRITTRY
MTKYERARVLGTRALQIAMCAPVMVELEGETDPLQIAMKELKQRKIPIIIRRYLPDHSYE
DWSIDELIIIDH