| New model in OGS2.0 | DPOGS206326 |
|---|---|
| Genomic Position | scaffold1212:- 25532-33156 |
| See gene structure | |
| CDS Length | 2733 |
| Paired RNAseq reads | 314 |
| Single RNAseq reads | 754 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA005269 (0.0) |
| Best Drosophila hit | CG6204 (2e-37) |
| Best Human hit | NFX1-type zinc finger-containing protein 1 (1e-61) |
| Best NR hit (blastp) | PREDICTED: similar to NFX1-type zinc finger-containing protein 1 [Tribolium castaneum] (3e-146) |
| Best NR hit (blastx) | PREDICTED: similar to Ab1-133 [Acyrthosiphon pisum] (1e-133) |
| GeneOntology terms | GO:0031048 chromatin silencing by small RNA GO:0030702 chromatin silencing at centromere GO:0031379 RNA-directed RNA polymerase complex GO:0005634 nucleus GO:0004386 helicase activity GO:0005515 protein binding GO:0031380 nuclear RNA-directed RNA polymerase complex GO:0006338 chromatin remodeling GO:0005829 cytosol GO:0003723 RNA binding GO:0005524 ATP binding GO:0016585 chromatin remodeling complex |
| InterPro families | IPR006935 UvrABC complex, subunit B |
| Orthology group | MCL13072 |
Nucleotide sequence:
ATGTATAGACATAAGCCACCGCCGACCCCCGACTTTTCTAATACCAAACAACCTACTGAG
AAACCGATAAGCAGTGATCCTCATAATTTCAGAAACTTAAACATATTTCCATCCAAAGAT
GACTTACTTGATATAAGTAATGTTAAAATTGTACCTCATATTGTGAATGGTGCATATCCC
TCCCTCGAACATTATTTGGATTTACAATTTAAACTGTTGAGAGAAGATTGTTTTGGTCCA
CTGAGAGAAGGCATAAATAAATATCTAGCAAATCCTTTGAAAAGAAAATATGAAAATATA
AGAGTATATCCAAAAGTGCGTGTAATCCGCGCGTATGTGAGCAACAATAAAGTTGGTCAT
TTAGTGGATATAGCGTGGGGTGAGAGAGCATCAAACATTTCCGTTGACTACAGGAAATGT
GCTCACAACAAACGACTGATGCATGGAAGCTTAGTATTATTCACCTGTGATAGTTTCCAG
AACATTCTGTGCGCTTCTGTATTGGATTCTAGTTTGGATCTCTTGAGATCTGGGTGTATT
GCTGTATCCTTTCAAAATCCAATATCGAGCAGTGTGTATTCTGAAAAGTTTCTTATGGTT
GAAAGTGAAGTATTCTTCGAGCCATATCACAGAGTGCTAAAAGTATTGCAGGAATACCAT
GACGTTATACCCATGAAGAAATATATTATTGATGTACAGCCAGAATCAAAACCACCGGCT
TACCTGACAGGAAACACCACTTATACTATCAGAGATCACGAATCACGAGAGATTACTTTT
CCAGTAGTTAATACAGATCAATGGCCGACACCGGAAGCCTTTGGGCTCGATCAATCACAG
TTAAACGCCTTTAAATTCGCATTGACAAGAGAATTTGCTGTCATACAAGGCCCGCCTGGT
ACTGGGAAAACGTTCTTAGGTGTCAAAATCGCTTCTACCCTCCTCAACAATCTGTCTTTC
CAAAACAACCCAATGCTAATAATTTGCTACACGAATCACGCCCTTGATCAATTTCTAGAA
GCCATTCTCGGTATTACCAAGAACGTTGTTAGATTGGGAAGTCAGAGCAAAAGTAAATTG
TTAGAGCCGTACAATATAAATAATGTTAGACTGAAAACGAAATCGAAATATTCCTATCTG
TTTTCTAAGAAACGGACTGAAATTGAGGTTATATTCAAAAAAATGACAGATTTGCAAACA
GTGATCGAGAAGTGTGAGAGAGAAGTGCTCTGCTACAAAACTATTAAGAAACATCTTAAA
ATTGGTGACGTACTACACGAACTGGACGCGTGCGATGAAGATGCGGTCTTAGATTGGCTG
TTTGAAGCAAATAACTCGAAGGAACGTACAGACGACTGGGAGAAGTTTCTAGAATACGAC
GACGGGATAGAGACGTGTTTCTCAGAAGAATATGCATTGAAACAAATAAGCACTATGAAC
GACAGTATGAAGTGTTTGATCGAAAATACCGATCAAATCAAAGGGGATAACGCTATTGAG
AAATTTCAAAAACTTATAACCAAAATGAAAAATAGATTAGAAACTTTTAAGAACTACATG
GTTTGTGCGGGTCTGTATCAAAACCTGGATGTTCCAAGTGTCAATGATCTATATGAACTC
GGCCAAGATGACAGATGGAAGTTGTACTTCAAAGCTGTTGAAGGAGTTAAACGTGAACTA
ACCGAGAAGATGAACCGTTTGATAACAGAGCACAATGCATGTAGTGAAGAGCTATCTGAA
GTCAGCAACCTCATTGATGAAGAGGTCCTGGGATGTGCGAGGGTTGTGGGAATTACTACC
AGTGGAGCAGCCAGCAGACATCGGCTCATGGATAAACTGGGTTGTAGTGTTGTTATTGTT
GAAGAAGCAGCTGAAGTATTGGAGGCACATATTGTTGCTTCACTCACACACAAGTGTGAA
CATCTTATACTGATCGGAGACCACAAACAACTGAGACCATCAACAGCCCATTATGTGTTA
GCAAAGAAATACAATCTAGAAATATCTCTGTTTGAAAGAATGATAAGAAATCGGATACAC
TCTATCACTCTAACAACTCAGAGGCGAATGAGAAGTAACTTCGTTGAACTCTTGGTTCCT
GTGATATACGATAAATTGGACAGTTTTAATGTAGATTATCCAAAGGTTAAGGGAATGAAG
GATAATTTGTACTTTTATAATCACAGTGCCTGGGAAGATACTGAGGGTCTAGAAGACAGT
TGGAGTCATAAAAATTCTTTTGAGGCGAAGTGGTGTGTTTCACTCGCTAACTACTTGAAA
CTAATGAAATATGACAGTGCAGATATCACCATACTCACAACATATACCGGACAAGTGACT
CTGATTAAGGAGATGGCGTCAAAATATCATCTCCTAAGCAACGTCAAAGTGGTAGTTGTA
GACAACTATCAAGGCGAGGAGAGCAGGATAGTTATACTGTCATTAGTAAGGAGCAACAGG
GACGGAGATATAGGATTCCTCAATGCCAGGAATAGGATATGTGTGGCGTTATCTAGAGCC
AAGGAAGGTTTCTACATCTTCGGTAACATGAATGTTCTAGAAAAAGCTAGTCCGACATGG
CGTCAAATACACGAGAAATTGAAAATACAGAAAGCTATAGGAAACAAAATCACAGTTATG
TGTGACATTCATGGAAAAACACTCGATATAAGATCTACGGCGGATATGGATAATTGCTTG
GACGTTTTCTGTCTGAGAAACTGCAGAGAATGA
Protein sequence:
MYRHKPPPTPDFSNTKQPTEKPISSDPHNFRNLNIFPSKDDLLDISNVKIVPHIVNGAYP
SLEHYLDLQFKLLREDCFGPLREGINKYLANPLKRKYENIRVYPKVRVIRAYVSNNKVGH
LVDIAWGERASNISVDYRKCAHNKRLMHGSLVLFTCDSFQNILCASVLDSSLDLLRSGCI
AVSFQNPISSSVYSEKFLMVESEVFFEPYHRVLKVLQEYHDVIPMKKYIIDVQPESKPPA
YLTGNTTYTIRDHESREITFPVVNTDQWPTPEAFGLDQSQLNAFKFALTREFAVIQGPPG
TGKTFLGVKIASTLLNNLSFQNNPMLIICYTNHALDQFLEAILGITKNVVRLGSQSKSKL
LEPYNINNVRLKTKSKYSYLFSKKRTEIEVIFKKMTDLQTVIEKCEREVLCYKTIKKHLK
IGDVLHELDACDEDAVLDWLFEANNSKERTDDWEKFLEYDDGIETCFSEEYALKQISTMN
DSMKCLIENTDQIKGDNAIEKFQKLITKMKNRLETFKNYMVCAGLYQNLDVPSVNDLYEL
GQDDRWKLYFKAVEGVKRELTEKMNRLITEHNACSEELSEVSNLIDEEVLGCARVVGITT
SGAASRHRLMDKLGCSVVIVEEAAEVLEAHIVASLTHKCEHLILIGDHKQLRPSTAHYVL
AKKYNLEISLFERMIRNRIHSITLTTQRRMRSNFVELLVPVIYDKLDSFNVDYPKVKGMK
DNLYFYNHSAWEDTEGLEDSWSHKNSFEAKWCVSLANYLKLMKYDSADITILTTYTGQVT
LIKEMASKYHLLSNVKVVVVDNYQGEESRIVILSLVRSNRDGDIGFLNARNRICVALSRA
KEGFYIFGNMNVLEKASPTWRQIHEKLKIQKAIGNKITVMCDIHGKTLDIRSTADMDNCL
DVFCLRNCRE