Genomic Position | scaffold5341:+ 2593-4719 |
---|---|
See gene structure | |
CDS Length | 2127 |
Paired RNAseq reads   | 5 |
Single RNAseq reads   | 23 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA011163 (2e-10) |
Best Drosophila hit   | ND |
Best Human hit | ND |
Best NR hit (blastp)   | endonuclease-reverse transcriptase [Bombyx mori] (0.0) |
Best NR hit (blastx)   | endonuclease-reverse transcriptase [Bombyx mori] (0.0) |
GeneOntology terms    | GO:0003964 RNA-directed DNA polymerase activity GO:0006278 RNA-dependent DNA replication GO:0005622 intracellular GO:0008270 zinc ion binding GO:0003723 RNA binding |
InterPro families   | IPR000477 Reverse transcriptase |
Orthology group | MCL10020 |
Nucleotide sequence:
ATGGAAGTTTTAAATGTAAACTTTTCTTCAGACCATAGACCAGTAAGAACAACATTAATA
TTAACAAAATGTAAGAAAACCAGATCAAGCTACAAAAATTACACATACTCGAAATTAAAA
ACAGAAGAAATTTCGAAATACTCAAAACAGATTACTTCCTACTTACCTGAACTCGATGAC
TGCTCTACATACTCTGTACAAACATTTCACGATAAGATAGTAAAAGCTATCTCTGAAAGC
CTTAAGATTGCTCGGATAACAAAAGGGAACACACAAAACAGGCATAATATTCTATCTGAG
CAAACACTGTCACTAATGAAAAGAAGACAAGATCTACAAAATACACCAAATAAAACCAGA
TCCATGAAAAACGAGCTGTCTGCACTATACAAGTTAACAAAGAAACTGATAAAACAAGAC
TACACCAGATACAGATATAATATCCTTGGAAAACACCTTACCCAAACAAATAGTTCAAAG
AAAGCTTTTAAAGAATTACAAACATATAAAACATGGATAGATGGACTAAACCAGAGAAAT
AAAACACTGAACAATCGAAATGATGTAGTAAACCTTGCAACAGATTTTTATAAAAAATTG
TATAGTGCTCCAGATTCAAATTGTTTCGAGACAGAACAGGAAATCATAAATTCAGCTAAA
CATCAAGAAGAAGATCACGGACCACAGCTCGACGTCGTAGACGTTGTAGAAGCGAATCAA
ATGTTAAAAGCAGAAAAAAGCCCTGGTCAAGATAATATAACCAACGAAGCCATAAAAAAC
GCATCAGCTCAACTGGCTCTGCCACTAACTGCATTGTTCAATCGCATACTAGGGACCACC
GAAATTCCAACCCAATGGTCTAATTCGGAGATAATACTGTTATACAAAAAAGGAGACCCA
CGCGATATAGGCAACTATAGGCCTATAAGTCTATTACCATGTTTATATAAACTATTCTCT
ATGCTCATCAACAAAAAAATTAGAAACACCTTAGATGCTGAACAACCCATAGAACAAGCA
GGATTCAGAAAGGGCTTCTCAACTATAGACCACATTCATACCATAGAACTCCTGATCGAA
AAGTATCAAGAATATCAGAAACCGCTATACATTGCTTACATAGATTATAAGAAAGCTTTT
GATACTGTGTCACATACGAGCATATGGAAAACACTGGTAGACCAAGGAGTAGAGACAATG
TATATACAGATAATTAAAAAGATATACGAAAACAGCGCAGCTAGAGTAAAACTAGACAGG
CCTGGCCCAAGCTTTCCTATCAGAAGAGGGGTAAAACAGGGCGACCCACTGTCCCTACAA
CTATTTATTGCTCTCCTAGAATCAATAATAAGAAACCTAGATTGGAAACAGTATGGATTA
AACATTAATGGCAAATACTTAAACCACCTTCGCTTCGCTGATGATCTAATTCTACTGTCA
GAAACAGACACACAGCTACAACTCATGATACACTCACTGAATAAATCCAGTAAACAAGTC
GGTTTAAAAATGAATCTAACTAAAACCATGGTCATGACTAACAGTATACAGAGGAAAATA
GTAGTTGACGACGAAATATTAAAATACACTGATAAATACATTTACCTGGGAAAACAAATA
GGCTTTAACAGAAACAACAGTGAACTAGAAATAGAACGAAGGATACAAAACACCTGGAAT
AAATATTGGGGTTTGAAAGAAATTTTTAAAAGCGATATGGCAGTACAAATAAAAACAAGA
GTAATGAATACATGTCTTTTGCCAGGCCTAACATACGGCTGTCAAACCTGGAAATTTACG
AACAAAACCAAAAACAAAATTATCAGCTGCCAACGTGCCTTGGAACGCAGTATGCTAAAC
ATCAAAAAAATTCAAAAGATTAGACATGATAAAATAAGAAACACATCAAAGGCTACTGAT
GCCCTAGAACAGACCTCAAGACTAAAATGGAAATGGGCAGGACATGTTGCGCGACTACAA
GATGAGAGGTGGACAAAGAAGGTCACCCTGTGGGGCGGACCGAAAGGAAAGCGTCACAGA
GGAAGACCCCACGCGAGATGGAAGTACGACATCACTCGGATTGCGGGCTCAAAATGGACC
GAAATAGCCATGGACAGAGACAAATGA
Protein sequence:
MEVLNVNFSSDHRPVRTTLILTKCKKTRSSYKNYTYSKLKTEEISKYSKQITSYLPELDD
CSTYSVQTFHDKIVKAISESLKIARITKGNTQNRHNILSEQTLSLMKRRQDLQNTPNKTR
SMKNELSALYKLTKKLIKQDYTRYRYNILGKHLTQTNSSKKAFKELQTYKTWIDGLNQRN
KTLNNRNDVVNLATDFYKKLYSAPDSNCFETEQEIINSAKHQEEDHGPQLDVVDVVEANQ
MLKAEKSPGQDNITNEAIKNASAQLALPLTALFNRILGTTEIPTQWSNSEIILLYKKGDP
RDIGNYRPISLLPCLYKLFSMLINKKIRNTLDAEQPIEQAGFRKGFSTIDHIHTIELLIE
KYQEYQKPLYIAYIDYKKAFDTVSHTSIWKTLVDQGVETMYIQIIKKIYENSAARVKLDR
PGPSFPIRRGVKQGDPLSLQLFIALLESIIRNLDWKQYGLNINGKYLNHLRFADDLILLS
ETDTQLQLMIHSLNKSSKQVGLKMNLTKTMVMTNSIQRKIVVDDEILKYTDKYIYLGKQI
GFNRNNSELEIERRIQNTWNKYWGLKEIFKSDMAVQIKTRVMNTCLLPGLTYGCQTWKFT
NKTKNKIISCQRALERSMLNIKKIQKIRHDKIRNTSKATDALEQTSRLKWKWAGHVARLQ
DERWTKKVTLWGGPKGKRHRGRPHARWKYDITRIAGSKWTEIAMDRDK