| New model in OGS2.0 | DPOGS202796 |
|---|---|
| Genomic Position | scaffold4203:- 15498-25454 |
| See gene structure | |
| CDS Length | 1272 |
| Paired RNAseq reads | 44 |
| Single RNAseq reads | 156 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA010476 (2e-107) |
| Best Drosophila hit | croquemort, isoform B (2e-45) |
| Best Human hit | scavenger receptor class B member 1 isoform 2 (8e-30) |
| Best NR hit (blastp) | scavenger receptor class B member 3 [Bombyx mori] (3e-115) |
| Best NR hit (blastx) | scavenger receptor class B member 3 [Bombyx mori] (1e-112) |
| GeneOntology terms | GO:0005044 scavenger receptor activity GO:0006909 phagocytosis GO:0006915 apoptosis GO:0005887 integral to plasma membrane GO:0006911 phagocytosis, engulfment GO:0006952 defense response GO:0006955 immune response GO:0048102 autophagic cell death GO:0042116 macrophage activation GO:0050764 regulation of phagocytosis GO:0035071 salivary gland cell autophagic cell death GO:0007155 cell adhesion GO:0016020 membrane GO:0002433 phagocytosis triggered by activation of immune response cell surface activating receptor |
| InterPro families | IPR002159 CD36 antigen |
| Orthology group | ND |
Nucleotide sequence:
ATGGTTGTCAGCAAGAACAGCATGTGGTTTGTTGGTTGCGGGATGAGTTTGGTCGGATTT
GGCGTACTCATGAGCGCGACCTGGTCGCTTGTTTTCCACGCTAAGATCAAAAATATGATG
GTCCTTAGGAACGGTTCGACATCTTTTGAGATTTGGCGAGATATTCCCATTCCGATATAC
TTGGAGTGTTTTCTATTCAACATAACAAATGTGGCCGACATTCTGATGGGAAAAAATGTT
CCTATACACGTCGAAGAACTCGGACCTTACGTGTTCCGAGAAAGAAGTACCAAGACAATC
GCTTATACAGTTCGCAATGAACCGCTGATGCTGAAGTTCATCATAGACATAAGTTTGAGG
ATGTACCACCAAAACATGTTCGTGACAGCGAACGCCTCGTCATGGCTGTTCGACGGCATA
CAGGATCCCATCCTGGATCTGGTCGAGAAGATTCCCAGCTTGCCTTACACCATACCCTTT
GATAGATTTGGCTGGTTTTACAAACGTAACGGATCGGTGGACGCGACTGGTCTCTTTCTA
GCTCATACTGGTGCATCAGACTTCACCAAACTGGGACACACGCTGAAATGGAACAACTCC
AATAAGACGGTGTTCCGTGGTCAATGCGGAGAGGTCCAGGGTACGACCGGGGAACTGTGG
AACTTGGAGAATGATGCGCCTGAAATTAAAATATACGCCGCTGATCTTTGCACGTACATC
AGCCTGGCTTATTCTGGAGATGTAATCAAAAAAGGCCTACCTGGAAGAGAGTTCGCAGCA
AATGACTCTCTTTTTGATAATGGACACAAATATCCACAAACGGCCTGTTACTGCGATGAG
AACAGCGGTAGGGACTGTTTGCCGTCTGGAGCGCTGAACGTGTCGGCCTGCAAGTACGGC
GCCCCGGCCATCGTGACGCGACCGCATTTCTTAGGCATGGACCCTTATTACGCTAACAAG
ATAAAAGGCTTACAGCCGGCACCTATAAACAACCAGTTACCGGACCCGGACACGTTGGTG
CCTATGTTTTGGTTCCGGGAAGAAATTGAAGTGAACGACGAGTACGCCAACTTCGCGAGG
AGCGCCCTTTCAGTGAGATACGGCGTTCCCTACGGCTTGTACGTTATGATAGCTCTCGGT
GCAAGCCTCCTGCTCAGTGGGTTGTATAAAATCAGAAGATTCCCTCTCCGGCAGTTAAGG
GAATGCGACGTCGCAGCGTCCCAAAAGTTTCTTAGCAATAACATAAGTCCAAACGTGACG
AACTCGACGTGA
Protein sequence:
MVVSKNSMWFVGCGMSLVGFGVLMSATWSLVFHAKIKNMMVLRNGSTSFEIWRDIPIPIY
LECFLFNITNVADILMGKNVPIHVEELGPYVFRERSTKTIAYTVRNEPLMLKFIIDISLR
MYHQNMFVTANASSWLFDGIQDPILDLVEKIPSLPYTIPFDRFGWFYKRNGSVDATGLFL
AHTGASDFTKLGHTLKWNNSNKTVFRGQCGEVQGTTGELWNLENDAPEIKIYAADLCTYI
SLAYSGDVIKKGLPGREFAANDSLFDNGHKYPQTACYCDENSGRDCLPSGALNVSACKYG
APAIVTRPHFLGMDPYYANKIKGLQPAPINNQLPDPDTLVPMFWFREEIEVNDEYANFAR
SALSVRYGVPYGLYVMIALGASLLLSGLYKIRRFPLRQLRECDVAASQKFLSNNISPNVT
NST