New model in OGS2.0 | DPOGS201720  |
---|---|
Genomic Position | scaffold438:- 109037-118010 |
See gene structure | |
CDS Length | 2811 |
Paired RNAseq reads   | 951 |
Single RNAseq reads   | 2618 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA014470 (4e-45) |
Best Drosophila hit   | pawn (2e-74) |
Best Human hit | protocadherin Fat 4 precursor (2e-06) |
Best NR hit (blastp)   | GM20944 [Drosophila sechellia] (1e-142) |
Best NR hit (blastx)   | PREDICTED: similar to pawn CG11101-PA [Tribolium castaneum] (8e-110) |
GeneOntology terms    | GO:0008407 bristle morphogenesis GO:0007602 phototransduction GO:0005509 calcium ion binding |
InterPro families    | IPR000082 SEA IPR000742 Epidermal growth factor-like, type 3 IPR013091 EGF calcium-binding IPR000152 EGF-type aspartate/asparagine hydroxylation site IPR013032 EGF-like region, conserved site IPR018097 EGF-like calcium-binding, conserved site IPR001881 EGF-like calcium-binding IPR006210 Epidermal growth factor-like |
Orthology group | MCL15125 |
Nucleotide sequence:
ATGCTAATGTCCTCCGGGTTCGGGGACAAGTTAGAATTTAAATTTCCGGGGGAAGGGAAG
AGGGCTCCGAAGGGGCGTGCACTAGCTCCTACGGGGCCCAAAATCAGGCCTACTGCGGTG
CAACCACAACTGTTCTCAACAGATACCCTTAAAGACCAGGGGAGACAGAACAGTGAAATA
CAGAATATAATTACCGGTATCGTAAAGTTGTTAAATGGGAACGTCAATGTGCAGGCCAAC
ACGCAGTTACTGAACGGCCGTCCAAGACCTATGGCGTCCAGGATAAATAACCGTGGACCA
CCAGATTTCGACGAACCTCTGACACCACCGCCGCTCGCTTATCATCCAACAAAAATACCC
CCACCTTACCCCTTTGATAGGCCTATCGGTGTTAATTTAGCTGATCGACTCCCACCGATC
AGTAATCGTCCAGGGTTTCATAGACCCATGCCTCCGTGGCAGCGTAGACCTAGACCTCCG
AATTCCAATCGGAGACCTAACCCAAACCTTCCCGTTTATAAGCCAACACTGATCCCTCCA
CCGGATATGACGTATATAAACGAAAAAGAAGACGAGAGTTACAACGAAAATGAATCTCAT
TTTGACATTCCAAACCACGAGGATAACATTCCGTTCATAACGCTACCGGATACAACTACT
GAGATAAGAAATATGACAGAGGAAATTCCAACTACCACCGACACTACGACATCTACAACA
GCGTCAACTACTTCTAGGACGACAACTACCACAAGTACTACGACAACTACAACAACTACA
ACAACTACGACAACACCGAAAACAACGACCGAGTTGACCACCGAGAAGACTACTACAGAA
AAGGTCAAGATCGAAAAGCCTGTCAAAGCAGACAAAGAAAAAAAGAGAGACCAATTAGGT
CCCGATAAGTTAAAAGACAAAATCAAAGTCACAGAAGATAAACCGACAGAGAGGCCCATC
AAGAATGATGCCATCACACCGGTGGCTATAGAACCCTCAGTCAGCGAGAGTCCGACGCCA
GTTACACAGTCCACTTCCTCTCCGACCCCTACCGAGGGGTTGATGACGCACGCGCCAACA
GTCAGCGAAACCACGAAGATACAAAATATAGAAACCTCCTCCATCAACTCTCAGCCGTTG
CCAACATCCCAAGGTATCCCGTACAAGCCGTATCCCCGGCCAGGGATAGTTCTAGACGAC
ACAGATTTCAAGCCCCACAAGTCCAGACACAGGCCTGACGCGTCCGTCATCACAGCCGAC
AGACTGCCGGGGTACGGGGAGATATTTGACGTGACAGTCTCCGCTATACAGGGCCCAGGG
GAAAAAGCTGGACCAGTGAACATACAGACGCATGTACACCACGGGTCACAGTACGCGGAC
GATATAATAGTGTCAGGGTCCGGGCAGCACAGCTTTGTCTCCATAGACGGCAAGAGGACC
TACCTGAACCTCTTCGACACCGGCAGCATCACGCCCACCAGCGTGCAGCCGGCCCCACAG
ACCAGCCTCCCGAAGACCCACGTCCCGTCGTTGGGGACGGGGGTGGCGATACCAGCCGAT
GATGTACCGGCTCCGCCGGCACCTCCCCCGAGGAGGCGACCCCAGACACCCTATAGGAGA
CCCCAGCCGACTGTACGCATAGACACCTGCATCGTGGGCGACGACTCCACCTGCGACCAG
AGCCAGAACGAGAGGTGCAGGACGGAGGCTGGTGTGTCCAGCTGCCAGTGCCGCGCGGGC
ACGGCTCGCCGCGTGCGCCACTCGCCCTGCCGCCGCGCCGTGTCGCTGTCGGTGTCGCTG
AGGGTGGACCGCCTCTACGACCGCCAGATCTCGTGGGACGAGAAGCTGTCTGACAAGGAG
TCGGAGCCGTACCAGCAGTTGAGCTACGAAGCCGTCAAAGCGATCGACTCCGCGTTCTCT
ATGACTCCGTTCTCCGATGACTTCGTGAGCGGCTCTGTGGACTCCATCGTGCGAGGTGGC
CCGCAGCACCCGGGGGTGTACGTTAACTTCACCGTATTGCTGTCCGAGACCCCCGAGACC
GTCCGTCCGGCCGTTGCGGGTGACATCCATCAGCACCTGGTGGGTGTCATCCGCCGCCGG
TCCAACAACGTGGGTGCTTCCGCCCTGTGGGTGACGCCCGAGGGCAGCGTGATAAATGTC
CGAGATGTAGACGAGTGCTCGTCCCCTGACCTCAACGACTGTCACACACTGGCGACCTGC
ACCAACACCTGGGGGGCTTTCAAATGCACGTGTCCCAACACGACCCTGGACCCCGCGCCG
GTGGCCAGCCGGGCGGGCCGCGAGTGCCGCTCGTGCGCCGCCTCGCACTGCAGCGACCGG
GGGCTCTGCCACTACAACAACGGACAGCCTTACTGCACGTGTTCATCTGGTTACTACGGC
TCCACTTGTGAGATGGACGGCGAGGTCATAGGGGTCTCCGTGGGGGCTTCGCTGGCGGCC
GCGCTCGTCATAGCCATCACACTGGCAGCCCTGCTCAGCTGGAGGATGGGCATGCATGGA
GTTCACACGGGAACTCTCAACACCATGACGTCACGGGCTAACACAGCCTCACACATATAC
GGTTACACAAATCACCTGGCATCCGAGTCCAGCTCGGAGGCGTCCAGTCACGTGCAGGAG
AGAGCCGACCTTCTGGTGCCCAGGCCCAAGTCACGAGCCAGGAGTATGCATAATCAGACG
GGCATCTACTATGATGTGGAATATGAGAACGCTGAACCCATATATGGAACCAAAGGCATC
CCGCTGTCCACCTACACCGTCAGCAGGGGACCGACCTTCTACAGACAATAA
Protein sequence:
MLMSSGFGDKLEFKFPGEGKRAPKGRALAPTGPKIRPTAVQPQLFSTDTLKDQGRQNSEI
QNIITGIVKLLNGNVNVQANTQLLNGRPRPMASRINNRGPPDFDEPLTPPPLAYHPTKIP
PPYPFDRPIGVNLADRLPPISNRPGFHRPMPPWQRRPRPPNSNRRPNPNLPVYKPTLIPP
PDMTYINEKEDESYNENESHFDIPNHEDNIPFITLPDTTTEIRNMTEEIPTTTDTTTSTT
ASTTSRTTTTTSTTTTTTTTTTTTTPKTTTELTTEKTTTEKVKIEKPVKADKEKKRDQLG
PDKLKDKIKVTEDKPTERPIKNDAITPVAIEPSVSESPTPVTQSTSSPTPTEGLMTHAPT
VSETTKIQNIETSSINSQPLPTSQGIPYKPYPRPGIVLDDTDFKPHKSRHRPDASVITAD
RLPGYGEIFDVTVSAIQGPGEKAGPVNIQTHVHHGSQYADDIIVSGSGQHSFVSIDGKRT
YLNLFDTGSITPTSVQPAPQTSLPKTHVPSLGTGVAIPADDVPAPPAPPPRRRPQTPYRR
PQPTVRIDTCIVGDDSTCDQSQNERCRTEAGVSSCQCRAGTARRVRHSPCRRAVSLSVSL
RVDRLYDRQISWDEKLSDKESEPYQQLSYEAVKAIDSAFSMTPFSDDFVSGSVDSIVRGG
PQHPGVYVNFTVLLSETPETVRPAVAGDIHQHLVGVIRRRSNNVGASALWVTPEGSVINV
RDVDECSSPDLNDCHTLATCTNTWGAFKCTCPNTTLDPAPVASRAGRECRSCAASHCSDR
GLCHYNNGQPYCTCSSGYYGSTCEMDGEVIGVSVGASLAAALVIAITLAALLSWRMGMHG
VHTGTLNTMTSRANTASHIYGYTNHLASESSSEASSHVQERADLLVPRPKSRARSMHNQT
GIYYDVEYENAEPIYGTKGIPLSTYTVSRGPTFYRQ