| Genomic Position | scaffold7689:+ 1785-4742 |
|---|---|
| See gene structure | |
| CDS Length | 2958 |
| Paired RNAseq reads | 1994 |
| Single RNAseq reads | 4880 |
| Migratory profiles | Query via corresponding ESTs |
| Best Bmobyx hit | BGIBMGA014330 (7e-40) |
| Best Drosophila hit | ND |
| Best Human hit | ND |
| Best NR hit (blastp) | endonuclease-reverse transcriptase HmRTE-e01 [Heliconius melpomene] (0.0) |
| Best NR hit (blastx) | endonuclease-reverse transcriptase HmRTE-e01 [Heliconius melpomene] (0.0) |
| GeneOntology terms | GO:0003964 RNA-directed DNA polymerase activity GO:0006278 RNA-dependent DNA replication GO:0005622 intracellular GO:0008270 zinc ion binding GO:0003723 RNA binding |
| InterPro families | IPR000477 Reverse transcriptase IPR005135 Endonuclease/exonuclease/phosphatase |
| Orthology group | MCL10012 |
Nucleotide sequence:
ATGGTTGCAAAAGTTTATGGACTGGGTACGGCTAGGGCGTCGCCGATAAACGACGCGCAG
GCACATCGCCCTACACCTGCGATAAGTGGGCAAGGGCTACCGTGTCAAGTACGGGCACGG
CTAAAGACGTTAGTACCCCAAAGGAAACTCCGCTTTGCAACGTGGAATATTGGCTCTCTA
ACCGGACGATGCAGAGAACTCGCAGATGTACTCATGAGACGTCGGGTCCAGTGTGCGTTC
CTCCAGGAAACTCGCTGGAAGGGCAATAAGTCTCGGAACATCGGACAGGGTTACCGGCTG
ATATACACTGGGTCGCCTTCAGGTAAAGCTGGTGTAGCGGTAGTGCTATCTGAAGAGCTT
CGGAATGGTCTTCTTGAAGTTGATCGTCGCTGCGACCGCCTGATGCGGGTGCGGGTACTG
ATCGAGGGAGTGATTACTAACTTGATCAGTGCTTATACTCCTCAGGCTGGATGTAGCGGG
TCCGAAAAAGAGTCATTCTGGGAGCAATTTGAAGAGGTTCTACGTGCTATACCAGCTGCT
GAAGTAATCATAGTTGGGGGGGACTTAAATGGCCACGTAGGTAGGGCTGCGGAAACGTTT
GACCGTGTACACGGTGGTTTTGGTTATGGTCGCCGCAATGCAGAGGGAGAAAATATTCTC
AGAACCTGTATTGCGTCTGACTTAGCCGTCGTGAACACGTTCTTCCAAAAGACTCCACAG
CACCTTATCACGTATAAGAGCGGGTCCCACTCAACCCAAATAGATTATCTGCTGACCAGA
CGGTGTCATATCAGCAAGGTGACTAACTGTAAAGTCATTCCTGGTGAAAGCCTGACGGCC
CAACATCGACTTCTTGTCATGGACTATGTCGTTACCCCGAAAAAGAAAGTGGCCGAGAAA
CGTAAGCCTCGCATCAGGTGGTGGTTGCTGAATGGAACGATGCAGACCAGCTTTCGGGCA
GAGGTTGAGAGTCAAAATCTGTCGACTAATACCGAAACTGCTCAGGAAGTTTGGGATCGA
GCCCAGTCAGCAATTATCACAGCAGGTAAACGAGTTCTAGGCCTTTCTAAGGGAGGACGG
GTCATTGACAAGGAGACATGGTGGTGGAATGACGAAGTGCAGGAGGTGATTCGTGAAAAG
AAGACTGCCTTTAAGAAGTGGCAGCAATCAAACTCTCCTGAAGACAGACTAGAGTACATA
GCAGCGAAACGTGCCAGTAAAAGGGCTGTTGCCAGAGCCCGCAGTGATAGGTTATCACCA
TTATATGATACACTTGAAACTGCGGAGGGGCAGAAGCTCATTTACAAATTGGCACGAGCT
CGGGATAAGGCGACGCAAGATATCGCAAAATGTCTTAGCGTCAAAGATTCCCAAGGCACG
TTGCTGTGTAATCATGCCTCTGTGAAGGAGAGATGGAGATGCTACTTCAAGGAGTTGCTA
AATACTCAGCACCCGTGCAGTCTTCCAACCGAAATACCTCCTAATCTTGGACTTATTGCC
CCGATAACACCTGACGAAACTCGGAATTGTCTTCGACGCATGAAGAATCGGAAAGCGGTG
GGACCTGACGATATTCCGATCGAAGCGTGGAAATCATTGGGCTCTCTTGGTGTGCTCATA
CTGACGGACCTTTTTAACCGCGTCTTGAACACTGGGACTATGCCACATCAGTGGCGTTAT
AGTTACATTACCCCTATATACAAAGGCAGGGGCAGTGTTCAAGATTGTGGTAGTTATAGG
GGCGTTAAGATCATGAGTCACACCATGAAGCTCTTTGAGCGTATGATCGACCTCAGGCTC
CGCCGAGAGTGTACTGTCTCGGAATGTCAATATGGATTTCAGCCAGGATCGGGCACCTTG
GACGCCATCTTTGCCATCAGAACTCTGATGGAGGCATACAGGGAAAAAAGGAGAGCTCTG
CATGTCGCATTCCTAGATCTGCAGAAGGCCTTTGACTGCGTGCCTCGTCAATGTATCTGG
TGGGCATTGCGATTCAAAGGGATCCCTGAGGCCTATATTGACATCATCAGAGACATGTAC
CGCGATTCCGTTTCAATGGTTAGGACTGCTGTTGGCGATACAAAACCCTTTCCGATCTCA
GTAGGGCTTCACCAAGGCTCGGCTCTTAGCCCCTTCTTGTTCAATGTAGTGCTGGACACT
GTCTCGGCTAACATCCAGGACCAGCCTCCATGGCTGATGATGTATGCCGATGACATAGCG
CTCATTGATGAGAGCAGGTTGACGCTAGAGCGAAGAGTGAACCTCTGGAAGGGTACGCTT
GAGAACGGTGGTCTTAAACTAAATGTGACGAAGACCGAGTACATGGCTTGCGGAAGCCCG
GACTCTTGCACTATCCATATAGGTCCTGAACCAGCCGTTAAGTCGGAAAAGTTCAGGTAC
CTTGGATCTATTCTGCATGAGTCCGGAGGCATCGATCACGATGTCCAAGCCCGGATCAGC
GCTGCTTGGGCGAAATGGCGTGAGGTCACAGGTGTGGTCTGCGATCGCAGAATACCTACC
AAGCTCAAGGGAATAATATACAAGAGCATAATCCGACCGGTTCTCTTATATGGAAGCGAA
TGTTGGCCAACACTGTCCAGGCACACTCAGGAGCTTCACGTCACGGAGATGAAGATGCTG
AGGTGGATGTGTGGCGTAACGCGGGCTGACCGTATACGTAACACATTTATCCGAGGTAGT
CTTGGAGTCCGTGACGTAGCGGATAAGCTTCAAGAGAGTCGCCTGAGATGGTATGGCCAC
GTTGCACGCCGGCCTGAGAATTACGTCGGAAAAATTTGCCTTGACATGTCGGTCCCTGGA
GCAAGACCCCCAGGACGCCCAAGAAAGCGATGGCTGGACACCGTGAAGCAGGATATGAGA
GCCAATGGACTTACCACCGCGGATGCTAAAGACCGTGCAAAGTGGAGGAGTTTGAGCAGG
AAGGCAGACCCTGGCTAA
Protein sequence:
MVAKVYGLGTARASPINDAQAHRPTPAISGQGLPCQVRARLKTLVPQRKLRFATWNIGSL
TGRCRELADVLMRRRVQCAFLQETRWKGNKSRNIGQGYRLIYTGSPSGKAGVAVVLSEEL
RNGLLEVDRRCDRLMRVRVLIEGVITNLISAYTPQAGCSGSEKESFWEQFEEVLRAIPAA
EVIIVGGDLNGHVGRAAETFDRVHGGFGYGRRNAEGENILRTCIASDLAVVNTFFQKTPQ
HLITYKSGSHSTQIDYLLTRRCHISKVTNCKVIPGESLTAQHRLLVMDYVVTPKKKVAEK
RKPRIRWWLLNGTMQTSFRAEVESQNLSTNTETAQEVWDRAQSAIITAGKRVLGLSKGGR
VIDKETWWWNDEVQEVIREKKTAFKKWQQSNSPEDRLEYIAAKRASKRAVARARSDRLSP
LYDTLETAEGQKLIYKLARARDKATQDIAKCLSVKDSQGTLLCNHASVKERWRCYFKELL
NTQHPCSLPTEIPPNLGLIAPITPDETRNCLRRMKNRKAVGPDDIPIEAWKSLGSLGVLI
LTDLFNRVLNTGTMPHQWRYSYITPIYKGRGSVQDCGSYRGVKIMSHTMKLFERMIDLRL
RRECTVSECQYGFQPGSGTLDAIFAIRTLMEAYREKRRALHVAFLDLQKAFDCVPRQCIW
WALRFKGIPEAYIDIIRDMYRDSVSMVRTAVGDTKPFPISVGLHQGSALSPFLFNVVLDT
VSANIQDQPPWLMMYADDIALIDESRLTLERRVNLWKGTLENGGLKLNVTKTEYMACGSP
DSCTIHIGPEPAVKSEKFRYLGSILHESGGIDHDVQARISAAWAKWREVTGVVCDRRIPT
KLKGIIYKSIIRPVLLYGSECWPTLSRHTQELHVTEMKMLRWMCGVTRADRIRNTFIRGS
LGVRDVADKLQESRLRWYGHVARRPENYVGKICLDMSVPGARPPGRPRKRWLDTVKQDMR
ANGLTTADAKDRAKWRSLSRKADPG