New model in OGS2.0 | DPOGS202312  |
---|---|
Genomic Position | scaffold3542:+ 32995-33416 |
See gene structure | |
CDS Length | 348 |
Paired RNAseq reads   | 17 |
Single RNAseq reads   | 111 |
Migratory profiles | Query via corresponding ESTs |
Best Bmobyx hit | BGIBMGA004983 (6e-09) |
Best Drosophila hit   | CG13511 (2e-08) |
Best Human hit | lipopolysaccharide-induced tumor necrosis factor-alpha factor isoform 1 (2e-07) |
Best NR hit (blastp)   | conserved hypothetical protein [Culex quinquefasciatus] (1e-11) |
Best NR hit (blastx)   | conserved hypothetical protein [Culex quinquefasciatus] (5e-14) |
GeneOntology terms    | GO:0043123 positive regulation of I-kappaB kinase/NF-kappaB cascade GO:0005765 lysosomal membrane GO:0004871 signal transducer activity GO:0006915 apoptosis GO:0016020 membrane GO:0050699 WW domain binding GO:0045449 regulation of transcription GO:0005813 centrosome GO:0005794 Golgi apparatus GO:0003702 RNA polymerase II transcription factor activity GO:0006357 regulation of transcription from RNA polymerase II promoter GO:0043231 intracellular membrane-bounded organelle |
InterPro families   | IPR006629 LPS-induced tumor necrosis factor alpha factor |
Orthology group | ND |
Nucleotide sequence:
ATGACTACAGTCGCACAAAATTCAGAGCTTCCTCCTCCATATACGGAGAGGGTGGACACC
GTGCAGCCGGTAACCAATCAGCCCATTGTACTTCAAACAGTTATAATACCTCTAACATTA
AAAAGAACACCCGTTTATGTTAATTGCCCAAACTGCAATGAGAGGATATTGACAACTGTA
CAACACACGAACACACAAAAGACGCATATGATTGCAGGATTTGTATGTGGTCTAACTCTT
TGTTGCATGCTCTGCTGTTTATCTGCAATACCGTACATAATTCCAACCTGCAAGAAAACT
GAACATTACTGCCCGAACTGTAAATCTTATATAGGCACGTATTCATAA
Protein sequence:
MTTVAQNSELPPPYTERVDTVQPVTNQPIVLQTVIIPLTLKRTPVYVNCPNCNERILTTV
QHTNTQKTHMIAGFVCGLTLCCMLCCLSAIPYIIPTCKKTEHYCPNCKSYIGTYS